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sp. nov., a halotolerant actinobacterium isolated from Taklamakan desert soil. | LitMetric

sp. nov., a halotolerant actinobacterium isolated from Taklamakan desert soil.

Int J Syst Evol Microbiol

Department of Microbial Chemistry, Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100050, PR China.

Published: May 2023

AI Article Synopsis

  • A novel actinobacterium, strain 10Sc9-8, was isolated from Taklamakan desert soil in China and is characterized as Gram-positive, aerobic, rod-shaped, and non-motile.
  • It thrives in a temperature range of 8-37°C, pH levels of 6.0-10.0, and up to 15% NaCl concentration, with optimal conditions at 28-30°C, pH 7.0-8.0, and 0-3% NaCl.
  • Phylogenetic and genomic analyses reveal that strain 10Sc9-8 is a new species within its genus, distinct based on its DNA characteristics and cell wall composition,

Article Abstract

A Gram-stain-positive, aerobic, non-motile, non-spore-forming and rod-shaped actinobacterium, designated strain 10Sc9-8, was isolated from Taklamakan desert soil sampled in the Xinjiang Uygur Autonomous Region, China. Strain 10Sc9-8 grew at 8‒37 °C (optimum, 28‒30 °C), pH 6.0‒10.0 (optimum, pH 7.0-8.0) and in the presence of 0‒15 % (w/v) NaCl (optimum, 0-3 %). Phylogenetic analysis based on 16S rRNA gene sequence suggested that strain 10Sc9-8 was affiliated with members of the genus and showed the highest 16S rRNA gene sequence similarity to Z443 (97.4 %). Phylogenomic analysis based on the whole genome sequences indicated that strain 10Sc9-8 should be assigned into the genus . The average nucleotide identity and digital DNA-DNA hybridization values calculated from the whole genome sequences indicated that strain 10Sc9-8 was clearly separated from other closely related species of the genus with values below the thresholds for species delineation. Chemotaxonomic analyses showed that the cell-wall peptidoglycan was in a variant of A4 type with an interpeptide bridge comprising l-Lys-l-Ala-Gly-l-Asp. The predominant menaquinone was MK-8(H). The polar lipids comprised diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol, phosphatidylinositol mannoside, several unidentified phospholipids, glycolipids and one unidentified lipid. The major fatty acids were anteiso-C, anteiso-C A and C. The genomic DNA G+C content was 72.7 mol%. On the basis of phenotypic, phylogenetic and phylogenomic data, strain 10Sc9-8 represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is 10Sc9-8 (=JCM 33946=CPCC 206219).

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Source
http://dx.doi.org/10.1099/ijsem.0.005906DOI Listing

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