Gmelin, 1791 is an edible sea cucumber species widespread in the Mediterranean Sea with ecological and increasing economic importance. Genome data of holothurian species is limited and the availability of genomic data resources is crucial in understanding their biology and adaptability mechanisms. This dataset presents the raw genome sequence data of sequenced on an Illumina NextSeq 2000 platform. Genome size estimation was performed based on k-mer frequency approach. Additionally, the bacterial microbiome in the stomach and intestine of collected from the Strymonian Gulf (North Aegean Sea, Greece) through 16S rRNA amplicon metabarcoding sequencing is reported. Sequencing was performed on an Illumina MiSeq platform. Analysis was conducted using the QIIME2 software package, the DADA2 algorithm and a trained classifier for taxonomy assignment. The datasets presented in this work serve as valuable resources for a comprehensive investigation of at the genome level and for comparative genomics and echinoderms gut microbial studies.
Download full-text PDF |
Source |
|---|---|
| http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10189087 | PMC |
| http://dx.doi.org/10.1016/j.dib.2023.109171 | DOI Listing |
Publication Analysis
Top Keywords
Similar Publications
Seasonal occurrence and distribution of microplastics in four different benthic suspension feeders from an Integrated Multi-Trophic Aquaculture (IMTA) facility: A bioremediation perspective.
Mar Pollut Bull
October 2024
Department of Biological and Environmental Science and Technology, University of Salento, Lecce, Italy; CoNISMa Consorzio Nazionale Interuniversitario per le Scienze del Mare, Rome, Italy; Institute of Marine Sciences (LABOMAR), Federal University of Ceará, Av. Abolicao 230, Fortaleza 60440-900, Brazil.
Microplastics (MPs) are dangerous and ubiquitous in the environment. The urgency to contrast plastic pollution is prompting the scientific community to offer new proposals. Recently, bioremediation using filter feeders is gaining consent as a nature-based solution.
View Article and Find Full Text PDFThe complete mitochondrial genome data of (Gmelin, 1791) from Malaysia.
Data Brief
August 2024
Faculty of Health and Life Sciences, INTI International University, Nilai, Negeri Sembilan, Malaysia.
(angelwing clam) is a mollusc species found in the coastal areas of Southeast Asia. Despite its economic significance, genetic information on the species is lacking. In this study, a specimen was collected from Kedah, Malaysia, and its complete mitochondrial genome was assembled using whole-genome sequencing data generated on an DNBSEQ-G400 platform.
View Article and Find Full Text PDFThe neogastropod family Vasidae comprises a small group of Late Eocene to Recent neogastropods with large, often ornate shells. A new, shell-based morphological classification of the family is proposed, in which ten genera are recognized: Altivasum Hedley, 1914, Aristovasum gen. nov.
View Article and Find Full Text PDFChromosome-level genome assembly of sea scallop Placopecten magellanicus provides insights into the genetic characteristics and adaptive evolution of large scallops.
Genomics
November 2023
Dalian Key Laboratory of Genetic Resources for Marine Shellfish, Liaoning Ocean and Fisheries Science Research Institute, Dalian, China; Key Laboratory of Protection and Utilization of Aquatic Germplasm Resource, Ministry of Agriculture and Rural Affairs, Dalian, China. Electronic address:
Placopecten magellanicus (Gmelin, 1791), a deep-sea Atlantic scallop, holds significant commercial value as a benthic marine bivalve along the northwest Atlantic coast. Recognizing its economic importance, the need to reconstruct its genome assembly becomes apparent, fostering insights into natural resources and generic breeding potential. This study reports a high-quality chromosome-level genome of P.
View Article and Find Full Text PDFEstuarine versus coastal marinas: Influence of the habitat on the settlement of non-indigenous peracarids on the polychaete Sabella spallanzanii (Gmelin, 1791).
Mar Pollut Bull
December 2023
Laboratorio de Biología Marina, Departamento de Zoología, Facultad de Biología, Universidad de Sevilla, Avenida Reina Mercedes 6, 41012 Seville, Spain.
Recreational marinas are key points for the introduction and secondary spread of non-indigenous species (NIS). However, little is known about the influence of the habitat surrounding the marina on NIS communities. To explore this issue, we compared peracarid assemblages associated to the widespread ecosystem engineer Sabella spallanzanii in lower estuarine marinas (with oceanic salinity) and coastal marinas of the south of the Iberian Peninsula.
View Article and Find Full Text PDFWant AI Summaries of new PubMed Abstracts delivered to your In-box?
Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!