Public repositories provide access to biological networks for investigations, and subsequently serve to distribute the network encoded biomedical and even clinically relevant results. However, inclusion of complementary information requires data structures and implementations customized to the integrated data for network representation, usage in supporting application, and extending analysis functionality. Partitioning of this information into individual aspects of a network facilitates compatibility and reusability of the network-based results, but also requires support and accessibility of the extensions and their implementations. The RCX extension hub offers overview and access to extensions of the Cytoscape exchange format implemented in R. The hub supports the realization of self-customized extension through guides, example implementations, and a template for the creation of R extension packages.
Download full-text PDF |
Source |
|---|---|
| http://dx.doi.org/10.3233/SHTI230352 | DOI Listing |
Publication Analysis
Top Keywords
Similar Publications
The RCX Extension Hub: A Resource for Implementations Extending the R Adaption of the Cytoscape Exchange Format.
Stud Health Technol Inform
May 2023
IT-Infrastructure for Translational Medical Research, University of Augsburg, Germany.
Public repositories provide access to biological networks for investigations, and subsequently serve to distribute the network encoded biomedical and even clinically relevant results. However, inclusion of complementary information requires data structures and implementations customized to the integrated data for network representation, usage in supporting application, and extending analysis functionality. Partitioning of this information into individual aspects of a network facilitates compatibility and reusability of the network-based results, but also requires support and accessibility of the extensions and their implementations.
View Article and Find Full Text PDFClinical Significance of Pre-treated Neutrophil-Lymphocyte Ratio in the Management of Urothelial Carcinoma: A Systemic Review and Meta-Analysis.
Front Oncol
December 2019
Department of Urology, Seoul National University College of Medicine, Seoul, South Korea.
We performed a study-level meta-analysis to summarize the current evidence on the correlation between pretreatment neutrophil-to-lymphocyte ratios (NLR) and oncological outcomes in each type of management for urothelial carcinoma. All articles published until February 2017 in PubMed, Scopus, and EMBASE database were collected and reviewed. The current evidence on correlations between pretreatment NLR and oncological outcomes in each type of management for urothelial carcinoma, including transurethral resection of bladder tumor (TURBT), radical cystectomy (RCx), chemotherapy (CTx), and nephroureterectomy (NUx), were summarized.
View Article and Find Full Text PDF[Coronary collateral circulation and prevention of ischemic mitral regurgitation].
Med Pregl
November 2000
Institut za kardiovaskularne bolesti, Sremska Kamenica.
Introduction: According to definition, collateral circulation is an alternative to major vascular flow which has become dysfunctional. Collateral channels, initially unused, are being formed due to impossibility of the main blood vessel to provide normal coronary flow. Recent controversies about collateral circulation are mainly based on their functional significance.
View Article and Find Full Text PDFThe stimulation of neoangiogenesis in the ischemic human heart by the growth factor FGF: first clinical results.
J Cardiovasc Surg (Torino)
December 1998
Department of Cardiac Surgery, University of Ulm, Germany.
Background: This paper is a report of our clinical experience with the human growth factor FGF as applied to the ischemic human myocardium.
Methods: After the completion of extensive preliminary animal experiments, the growth factor FGF, obtained from genetically manipulated E. coli bacteria and highly purified, was introduced into aortocoronary bypass surgery as an additional therapeutic agent.
Want AI Summaries of new PubMed Abstracts delivered to your In-box?
Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!