Unlabelled: Extreme difficulties in species identification of illegally sourced wood with conventional tools have accelerated illicit logging activities, leading to the destruction of natural resources in India. In this regard, the study primarily focused on developing a DNA barcode database for 41 commercial timber tree species which are highly vulnerable to adulteration in south India. The developed DNA barcode database was validated using an integrated approach involving wood anatomical features of traded wood samples collected from south India. Traded wood samples were primarily identified using wood anatomical features using IAWA list of microscopic features for hardwood identification. Consortium of Barcode of Life (CBOL) recommended barcode gene regions ( & ) were employed for developing DNA barcode database. Secondly, we employed artificial intelligence (AI) analytical platform, Waikato Environment for Knowledge Analysis (WEKA) for analyzing DNA barcode sequence database which could append precision, speed, and accuracy for the entire identification process. Among the four classification algorithms implemented in the machine learning algorithm (WEKA), best performance was shown by SMO, which could clearly allocate individual samples to their respective sequence database of biological reference materials (BRM) with 100 % accuracy, indicating its efficiency in authenticating the traded timber species. Major advantage of AI is the ability to analyze huge data sets with more precision and also provides a large platform for rapid authentication of species, which subsequently reduces human labor and time.

Supplementary Information: The online version contains supplementary material available at 10.1007/s13205-023-03604-0.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10182240PMC
http://dx.doi.org/10.1007/s13205-023-03604-0DOI Listing

Publication Analysis

Top Keywords

dna barcode
20
barcode database
16
artificial intelligence
8
developing dna
8
south india
8
wood anatomical
8
anatomical features
8
traded wood
8
wood samples
8
sequence database
8

Similar Publications

The chloroplast genome is an important tool for studying plant classification, evolution, and the heterologous production of secondary metabolites and protein drugs. With advancements in sequencing technology and reductions in sequencing costs, chloroplast genome data have rapidly accumulated. However, existing chloroplast genome databases suffer from issues such as incomplete data, inadequate management, and inconsistent, inaccurate information, posing significant challenges for the development and utilization of the chloroplast genome.

View Article and Find Full Text PDF

Artemisiae Scoporiae Herba is derived from Artemisia scoparia or A. capillaris. The accurate identification of the herbs, particularly when dealing with bulk samples, is critical for ensuring the quality and efficacy of the medicinal product.

View Article and Find Full Text PDF

The genus boasts abundant germplasm resources and comprises numerous species. Among these, medicinal plants of this genus, which have a long history, have garnered attention of scholars. This study sequenced and analyzed the chloroplast genomes of six species of medicinal plants (, , , , , and , respectively) to explore their interspecific relationships.

View Article and Find Full Text PDF

Oligo-FISH barcode chromosome identification system provides novel insights into the natural chromosome aberrations propensity in the autotetraploid cultivated alfalfa.

Hortic Res

January 2025

Key Laboratory of Xinjiang Phytomedicine Resource and Utilization of Ministry of Education, Key Laboratory of Oasis Town and Mountain-basin System Ecology of Xinjiang Production and Construction Corps, College of Life Sciences, Shihezi University, Shihezi 832003, China.

Alfalfa is one of the most economically valuable forage crops in the world. However, molecular cytogenetic studies in alfalfa lag far behind other cash crops and have reached a bottleneck. Here, we developed a novel chromosome identification system by designing 21 oligo probes in specific regions of each chromosome, which can be used as a barcode to simultaneously distinguish all chromosomes in a cell.

View Article and Find Full Text PDF

Description of five new species from southern China, with note on the type species of Pocock, 1901 (Araneae, Halonoproctidae).

Biodivers Data J

January 2025

Key Laboratory of Zoological Systematics and Application, College of Life Sciences, Hebei University, Baoding, China Key Laboratory of Zoological Systematics and Application, College of Life Sciences, Hebei University Baoding China.

Background: The genus Pocock, 1901 previously included 25 known species and one subspecies from Asia, 12 species and one subspecies were reported in China.

New Information: Five new species of Pocock, 1901 from southern China are described: (♂♀) from Hainan, (♂♀) from Chongqing, (♂♀) from Hunan, (♂) from Sichuan and (♂♀) from south part of Shaanxi. DNA barcodes of the new species described herein are provided.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!