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A polyphasic taxonomy analysis reveals the presence of an ecotype of associated with the gut of -bark beetles. | LitMetric

AI Article Synopsis

  • - Species from a specific genus are key components of the gut microbiome of bark beetles, significant pests affecting pine forests in North America and Eurasia.
  • - Researchers examined 300 bacterial isolates from the beetle gut, ultimately focusing on 10 which underwent detailed analysis including genome sequencing and phylogenetic studies to confirm their classification.
  • - Findings indicated that two bacterial strains, ChDrAdgB13 and JaDmexAd06, possess unique features like peritrichous flagella and fimbriae, confirming they form a dominant ecotype within the beetles' gut, crucial throughout all their life stages.

Article Abstract

Species belonging to the genus are dominant members of the core gut bacteriome of -bark beetles, a group of insects that includes the most destructive agents of pine forest in North and Central America, and Eurasia. From 300 isolates recovered from the gut of these beetles, 10 were selected to describe an ecotype of . The polyphasic approach conducted with these isolates included phenotypic characteristics, fatty acid analysis, 16S rRNA gene, multilocus sequence analyses (, , and genes), and complete genome sequencing of two isolates, ChDrAdgB13 and JaDmexAd06, representative of the studied set. Phenotypic characterization, chemotaxonomic analysis, phylogenetic analyses of the 16S rRNA gene, and multilocus sequence analysis showed that these isolates belonged to . The G + C content of the genome of ChDrAdgB13 (52.8%) and JaDmexAd06 (52.9%) was similar to those from other species. The ANI between ChdrAdgB13 and JaDmexAd06 and species including , varied from 84.02 to 99.18%. The phylogenomic analysis showed that both strains integrated a consistent and well-defined cluster, together with . A noteworthy observation is the presence of peritrichous flagella and fimbriae in the strains ChDrAdgB13 and JaDmexAd06. The analysis of genes encoding the flagellar system of these strains and species showed the presence of -1 primary system encoding peritrichous flagella, as well as fimbriae genes from the families type 1, α, β and σ mainly encoding chaperone/usher fimbriae and other uncharacterized families. All this evidence indicates that isolates from the gut of -bark beetles are an ecotype of , which is dominant and persistent in all developmental stages of these bark beetles and one of the main members of their core gut bacteriome.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10174453PMC
http://dx.doi.org/10.3389/fmicb.2023.1171164DOI Listing

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