Cancer prediction from few amounts of histology samples through self-attention based multi-routines cross-domains network.

Phys Med Biol

College of Electronic Information and Optical Engineering, Nankai University, Tianjin 300350, People's Republic of China.

Published: May 2023

Objective: Rapid and efficient analysis of cancer has become a focus of research. Artificial intelligence can use histopathological data to quickly determine the cancer situation, but still faces challenges. For example, the convolutional network is limited by the local receptive field, human histopathological information is precious and difficult to be collected in large quantities, and cross-domain data is hard to be used to learn histopathological features. In order to alleviate the above questions, we design a novel network, Self-attention based multi-routines cross-domains network (SMC-Net).

Approach: Feature analysis module and decoupling analysis module designed are the core of the SMC-Net. The feature analysis module base on multi-subspace self-attention mechanism with pathological feature channel embedding. It in charge of learning the interdependence between pathological features to alleviate the problem that the classical convolution model is difficult to learn the impact of joint features on pathological examination results. The decoupling analysis module base on the designed multi-channel and multi-discriminator architecture. Its function is to decouple the features related to the target task in cross-domain samples so that the model has cross-domain learning ability.

Main Results: To evaluate the performance of the model more objectively, three datasets are used. Compared with other popular methods, our model achieves better performance without performance imbalance. In this work, a novel network is design. It can use domain-independent data to assist in the learning of target tasks, and can achieve acceptable histopathological diagnosis results even in the absence of data.

Significance: The proposed method has higher clinical embedding potential and provides a viewpoint for the combination of deep learning and histopathological examination.

Download full-text PDF

Source
http://dx.doi.org/10.1088/1361-6560/acd2a0DOI Listing

Publication Analysis

Top Keywords

analysis module
16
self-attention based
8
based multi-routines
8
multi-routines cross-domains
8
cross-domains network
8
novel network
8
feature analysis
8
decoupling analysis
8
module base
8
network
5

Similar Publications

Background: Spinal cord injury (SCI) triggers a complex inflammatory response that impedes neural repair and functional recovery. The modulation of macrophage phenotypes is thus considered a promising therapeutic strategy to mitigate inflammation and promote regeneration.

Methods: We employed microarray and single-cell RNA sequencing (scRNA-seq) to investigate gene expression changes and immune cell dynamics in mice following crush injury at 3 and 7 days post-injury (dpi).

View Article and Find Full Text PDF

A POCT assay based on commercial HCG strip for miRNA21 detection by integrating with RCA-HCR cascade amplification and CRISPR/Cas12a.

Mikrochim Acta

January 2025

Beijing Key Laboratory for Separation and Analysis in Biomedicine and Pharmaceuticals, School of Medical Technology, Beijing Institute of Technology, Beijing, 100081, China.

A point-of-care testing (POCT) assay based on commercial HCG strip was proposed for miRNA21 detection by integrating RCA-HCR cascaded isothermal amplification with CRISPR/Cas12a. Three modules were integrated in the proposed platform: target amplification module composed of rolling circle amplification (RCA) cascaded with hybridization chain reaction (HCR), signal transduction module composed of CRISPR/Cas12a combined with HCG-agarose gel beads probes, and signal readout module composed of commercial HCG strips. The proposed RCA-HCR-CRISPR/Cas12a-HCG strip assay for miRNA21 detection had high sensitivity, and the limit of detection was as low as 37 fM.

View Article and Find Full Text PDF

Alzheimer's disease (AD), a prevalent neurodegenerative disorder, is characterized by mitochondrial dysfunction and immune dysregulation. This study is aimed at developing a risk prediction model for AD by integrating multi-omics data and exploring the interplay between mitochondrial energy metabolism-related genes (MEMRGs) and immune cell dynamics. We integrated four GEO datasets (GSE132903, GSE29378, GSE33000, GSE5281) for differential gene expression analysis, functional enrichment, and weighted gene co-expression network analysis (WGCNA).

View Article and Find Full Text PDF

Atherosclerosis (AS) is a chronic vascular disease characterized by inflammation of the arterial wall and the formation of cholesterol plaques. Hashimoto's thyroiditis (HT) is an autoimmune disorder marked by chronic inflammation and destruction of thyroid tissue. Although previous studies have identified common risk factors between AS and HT, the specific etiology and pathogenic mechanisms underlying these associations remain unclear.

View Article and Find Full Text PDF

A Descriptive Comparative Analysis of Safety Concerns Outlaid in the Risk Management Plans of the European Union and Japan.

Pharmacoepidemiol Drug Saf

January 2025

Department of Clinical Medicine (Pharmaceutical Medicine), Graduate School of Pharmaceutical Sciences, Kitasato University, Tokyo, Japan.

Purpose: This study aimed to obtain a better understanding of the characteristics of the risk management plans (RMP) and the background regulatory policies governing them, in the European Union (EU) and Japan. This was done by descriptively comparing the safety concerns (SCs) listed in the RMP and examining their relationships with product labeling.

Methods: Information regarding SCs was collected from the published RMP of both the EU and Japan for the targeted products-all of which were commonly approved in both regions.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!