Identification of INSRR as an immune-related gene in the tumor microenvironment of glioblastoma by integrated bioinformatics analysis.

Med Oncol

Department of Neurosurgery, Xijing Hospital, Fourth Military Medical University, Xi'an No. 127, Changle West Road, Xincheng District, Xi'an, Shaanxi Province, China.

Published: April 2023

AI Article Synopsis

  • Gliomas are the most common malignant tumors in the central nervous system, and their tumor microenvironment (TME) significantly influences tumor behavior and immune response.
  • This study investigated biomarkers related to the TME in glioblastoma (GBM) using data from 1222 samples, aiming to enhance predictions of immunotherapy effectiveness and patient prognosis.
  • The research found that INSRR is an important immune-related biomarker associated with TME, linking it to immune cell types and specific pathways, and highlighting frequent mutations in key genes like TP53, EGFR, and PTEN linked to immune scores.

Article Abstract

Gliomas are the most common malignant tumors in the central nervous system. The tumor microenvironment (TME) plays a crucial role in tumor proliferation, invasion, angiogenesis, and immune escape. However, little is known about TME in gliomas. The purpose of this study was to explore the biomarkers associated with TME in glioblastoma (GBM) to predict immunotherapy effectiveness and prognosis in patients. Based on RNA-seq transcriptome data and clinical features of 1222 samples (113 normal samples and 1109 tumor samples) in The Cancer Genome Atlas (TCGA) database, the ImmuneScore, StromalScore, and ESTIMATEScore were calculated by ESTIMATE algorithm. The differentially expressed genes (DEGs) and differentially mutated genes (DMGs) were determined in the TCGA GBM cohort. Furthermore, gene set enrichment analysis (GSEA) was used to investigate the enrichment pathways of INSRR genes with abnormal expression. The proportion of tumor-infiltrating immune cells (TIICs) was evaluated by CIBERSORT. Frequent mutations of TP53, EGFR, and PTEN occurred in high and low immune scores. The cross-analysis of DEGs and DMGs revealed that INSRR was an immune-related biomarker in the TCGA GBM cohort. According to GSEA, the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway with INSRR abnormal expression were IgA-produced intestinal immune network and Alzheimer's disease, oxidative phosphorylation, and Parkinson's disease, respectively. Additionally, INSRR expression was correlated with dendritic cells activated, dendritic cells resting, T cells CD8, and T cell gamma delta. INSRR is associated with the immune microenvironment in GBM and is used as a biomarker to predict immune invasion.

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http://dx.doi.org/10.1007/s12032-023-02023-8DOI Listing

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Identification of INSRR as an immune-related gene in the tumor microenvironment of glioblastoma by integrated bioinformatics analysis.

Med Oncol

April 2023

Department of Neurosurgery, Xijing Hospital, Fourth Military Medical University, Xi'an No. 127, Changle West Road, Xincheng District, Xi'an, Shaanxi Province, China.

Article Synopsis
  • Gliomas are the most common malignant tumors in the central nervous system, and their tumor microenvironment (TME) significantly influences tumor behavior and immune response.
  • This study investigated biomarkers related to the TME in glioblastoma (GBM) using data from 1222 samples, aiming to enhance predictions of immunotherapy effectiveness and patient prognosis.
  • The research found that INSRR is an important immune-related biomarker associated with TME, linking it to immune cell types and specific pathways, and highlighting frequent mutations in key genes like TP53, EGFR, and PTEN linked to immune scores.
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