Shadow energy functionals and potentials in Born-Oppenheimer molecular dynamics.

J Chem Phys

Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA.

Published: April 2023

In Born-Oppenheimer molecular dynamics (BOMD) simulations based on the density functional theory (DFT), the potential energy and the interatomic forces are calculated from an electronic ground state density that is determined by an iterative self-consistent field optimization procedure, which, in practice, never is fully converged. The calculated energies and forces are, therefore, only approximate, which may lead to an unphysical energy drift and instabilities. Here, we discuss an alternative shadow BOMD approach that is based on backward error analysis. Instead of calculating approximate solutions for an underlying exact regular Born-Oppenheimer potential, we do the opposite. Instead, we calculate the exact electron density, energies, and forces, but for an underlying approximate shadow Born-Oppenheimer potential energy surface. In this way, the calculated forces are conservative with respect to the approximate shadow potential and generate accurate molecular trajectories with long-term energy stabilities. We show how such shadow Born-Oppenheimer potentials can be constructed at different levels of accuracy as a function of the integration time step, δt, from the constrained minimization of a sequence of systematically improvable, but approximate, shadow energy density functionals. For each energy functional, there is a corresponding ground state Born-Oppenheimer potential. These pairs of shadow energy functionals and potentials are higher-level generalizations of the original "zeroth-level" shadow energy functionals and potentials used in extended Lagrangian BOMD [Niklasson, Eur. Phys. J. B 94, 164 (2021)]. The proposed shadow energy functionals and potentials are useful only within this extended dynamical framework, where also the electronic degrees of freedom are propagated as dynamical field variables together with the atomic positions and velocities. The theory is quite general and can be applied to MD simulations using approximate DFT, Hartree-Fock, or semi-empirical methods, as well as to coarse-grained flexible charge models.

Download full-text PDF

Source
http://dx.doi.org/10.1063/5.0146431DOI Listing

Publication Analysis

Top Keywords

shadow energy
20
energy functionals
16
functionals potentials
16
born-oppenheimer potential
12
approximate shadow
12
shadow
9
energy
9
born-oppenheimer molecular
8
molecular dynamics
8
potential energy
8

Similar Publications

In this study, a hybrid energy harvesting system based on a conventional solar cell combined with 3D-printed metasurface units is studied. Millimeter-scale metasurface units were fabricated via the stereolithography technique, and then they were covered with conductive silver paint, in order to achieve high electric conductivity. The performance of single, as well as two-unit metasurface harvesters, was thoroughly investigated.

View Article and Find Full Text PDF
Article Synopsis
  • The study explores the development of a linac-mounted photon-counting detector (PCD) for image-guided radiotherapy (IGRT) that could significantly enhance imaging by improving soft-tissue contrast and spatial resolution compared to traditional flat panel detectors (FPDs).
  • Researchers characterized the image quality of the PCD, focusing on parameters like 2D spatial resolution, noise, and contrast, by comparing it with an FPD using various imaging techniques and calibration methods.
  • Results showed that the PCD provides a linear energy calibration and better raw contrast in images, suggesting its potential for improved tumor delineation in radiation therapy applications.
View Article and Find Full Text PDF

Aging enacted in practice: How unloved objects thrive in the shadows of care.

J Aging Stud

December 2024

Faculty of Humanities, Open University of the Netherlands, Valkenburgerweg 177, P.O. Box 2960, 6401 DL Heerlen, the Netherlands.

In this paper, we explore the seeming stability of aging. More precisely, we offer an empirical account of how aging - images of aging, embodiments of aging, feelings about aging - is enacted in company practice, both in place and across time. Drawing on ethnographic fieldwork conducted at SMCare, a small-to-medium sized company active in the care technology sector, we show how aging achieves its stability not through practices that are characterized by affection, or purposefully targeted at maintaining or caring for aging, but due to ongoing re-enactments in the shadows of other care practices.

View Article and Find Full Text PDF

Lunarminer Framework for Nature-Inspired Swarm Robotics in Lunar Water Ice Extraction.

Biomimetics (Basel)

November 2024

School of Electrical and Mechanical Engineering, The University of Adelaide, Adelaide 5005, Australia.

The Lunarminer framework explores the use of biomimetic swarm robotics, inspired by the division of labor in leafcutter ants and the synchronized flashing of fireflies, to enhance lunar water ice extraction. Simulations of water ice extraction within Shackleton Crater showed that the framework may improve task allocation, by reducing the extraction time by up to 40% and energy consumption by 31% in scenarios with high ore block quantities. This system, capable of producing up to 181 L of water per day from excavated regolith with a conversion efficiency of 0.

View Article and Find Full Text PDF

Green synthesis of carbon dot structures from and Schottky diode fabrication.

Beilstein J Nanotechnol

November 2024

Department of Nanoscience and Nanoengineering, Graduate School of Natural and Applied Sciences, Atatürk University, 25240, Erzurum, Turkey.

In this study, we aimed to synthesize new carbon dot structures (CDs) in a single step by using the plant for the first time and to contribute to the studies in the field of diode fabrication by using the new CDs. The CDs were obtained by hydrothermal synthesis, which is commonly used in the literature. TEM and zeta potential measurements were used to determine morphology and sizes of the CDs, and XRD, XPS, and FTIR and micro-Raman spectroscopy were used for structural characterization.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!