Decontamination and Annotation of the Draft Genome Sequence of the Oomycete Lagenidium giganteum ARSEF 373.

Microbiol Resour Announc

Department of Biological Sciences, Nova Southeastern University, Fort Lauderdale, Florida, USA.

Published: May 2023

AI Article Synopsis

Article Abstract

Scaffolds of a previously published Lagenidium giganteum ARSEF 373 genome assembly found at GenBank were filtered to remove contaminating sequences. Genome annotation of the 437 scaffolds (total length, 56.2 MB; GC content, 58.8%) with confirmed sequences identified 13,069 potential protein-coding genes, encoding at least 737 predicted secreted proteins and >100 putative translocated effectors.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10190603PMC
http://dx.doi.org/10.1128/mra.01346-22DOI Listing

Publication Analysis

Top Keywords

lagenidium giganteum
8
giganteum arsef
8
arsef 373
8
decontamination annotation
4
annotation draft
4
draft genome
4
genome sequence
4
sequence oomycete
4
oomycete lagenidium
4
373 scaffolds
4

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!