FAIR and scalable management of small-angle X-ray scattering data.

J Appl Crystallogr

Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Allmandring 31, Stuttgart 70569, Germany.

Published: April 2023

A modular research data management toolbox based on the programming language Python, the widely used computing platform , the standardized data exchange format for analytical data (AnIML) and the generic repository Dataverse has been established and applied to analyze small-angle X-ray scattering (SAXS) data according to the FAIR data principles (findable, accessible, interoperable and reusable). The library is a community-driven effort to develop tools for data acquisition, analysis, visualization and publishing of SAXS data. Metadata from the experiment and the results of data analysis are stored as an AnIML document using the novel Python-native API. The AnIML document, measured raw data and plots resulting from the analysis are combined into an archive in OMEX format and uploaded to Dataverse using the novel API, which makes each data set accessible via a unique DOI and searchable via a structured metadata block. is applied to study the effects of alkyl chain length and counterions on the phase diagrams of alkyltrimethyl-ammonium surfactants in order to demonstrate the feasibility and usefulness of a scalable data management workflow for experiments in physical chemistry.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10077856PMC
http://dx.doi.org/10.1107/S1600576723001577DOI Listing

Publication Analysis

Top Keywords

data
12
small-angle x-ray
8
x-ray scattering
8
data management
8
saxs data
8
animl document
8
fair scalable
4
scalable management
4
management small-angle
4
scattering data
4

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!