AI Article Synopsis
- Bacteriophages help maintain ecosystems by controlling bacterial populations, but there’s a gap in our understanding of their diversity due to inadequate bioinformatics standards.* -
- ViroProfiler is a new online tool designed for analyzing viral metagenomic data, which can run on local Linux systems or in the cloud.* -
- This tool uses containerization for consistent results and supports collaborative research, and it is available for free at https://github.com/deng-lab/viroprofiler.*
Article Abstract
Bacteriophages play central roles in the maintenance and function of most ecosystems by regulating bacterial communities. Yet, our understanding of their diversity remains limited due to the lack of robust bioinformatics standards. Here we present ViroProfiler, an in-silico workflow for analyzing shotgun viral metagenomic data. ViroProfiler can be executed on a local Linux computer or cloud computing environments. It uses the containerization technique to ensure computational reproducibility and facilitate collaborative research. ViroProfiler is freely available at https://github.com/deng-lab/viroprofiler.
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| http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10072060 | PMC |
| http://dx.doi.org/10.1080/19490976.2023.2192522 | DOI Listing |
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