Exploring the Non-Covalent Bonding in Water Clusters.

Int J Mol Sci

Grupo de Química Computacional y Teórica (QCT-UR), Escuela de Ingeniería Ciencia y Tecnología (EICT), Universidad del Rosario, Bogotá 111221, Colombia.

Published: March 2023

QTAIM and source function analysis were used to explore the non-covalent bonding in twelve different water clusters (HO) obtained by considering = 2-7 and various geometrical arrangements. A total of seventy-seven O-H⋯O hydrogen bonds (HBs) were identified in the systems under consideration, and the examination of the electron density at the bond critical point (BCP) of these HBs revealed the existence of a great diversity of O-H⋯O interactions. Furthermore, the analysis of quantities, such as |V(r)|/G(r) and H(r), allowed a further description of the nature of analogous O-H⋯O interactions within each cluster. In the case of 2-D cyclic clusters, the HBs are nearly equivalent between them. However, significant differences among the O-H⋯O interactions were observed in 3-D clusters. The assessment of the source function (SF) confirmed these findings. Finally, the ability of SF to decompose the electron density () into atomic contributions allowed the evaluation of the localized or delocalized character of these contributions to at the BCP associated to the different HBs, revealing that weak O-H⋯O interactions have a significant spread of the atomic contributions, whereas strong interactions have more localized atomic contributions. These observations suggest that the nature of the O-H⋯O hydrogen bond in water clusters is determined by the inductive effects originated by the different spatial arrangements of the water molecules in the studied clusters.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10049637PMC
http://dx.doi.org/10.3390/ijms24065271DOI Listing

Publication Analysis

Top Keywords

o-h⋯o interactions
16
water clusters
12
atomic contributions
12
non-covalent bonding
8
source function
8
o-h⋯o hydrogen
8
electron density
8
clusters
6
o-h⋯o
6
interactions
5

Similar Publications

Molecular Simulation Study of All-Silica Zeolites for the Adsorptive Removal of Airborne Chloroethenes.

Langmuir

January 2025

Faculty of Geosciences, University of Bremen, Klagenfurter Straße 2-4, Bremen 28359, Germany.

Chloroethenes (CHCl with = 1, 2, 3, 4) are produced and consumed in various industrial processes. As the release of these compounds into air, water, and soils can pose significant risks to human health and the environment, different techniques have been exploited to prevent or remediate chloroethene pollution. Although several previous experimental and computational studies investigated the removal of chloroethenes using zeolite adsorbents, their structural diversity in terms of pore size and pore topology has hardly been explored so far.

View Article and Find Full Text PDF

Londonderry Air.

JAMA Neurol

January 2025

Department of Medicine, Tufts Medical Center, Boston, Massachusetts.

View Article and Find Full Text PDF

Thermal Adaptation in Worldwide Collections of a Major Fungal Pathogen.

Mol Plant Microbe Interact

January 2025

ETH Zurich Department of Environmental Systems Science, Plant Pathology Group, Institute of Integrative Biology, Zurich, Zürich, Switzerland.

Adaptation to new climates poses a significant challenge for plant pathogens during range expansion, highlighting the importance of understanding their response to climate to accurately forecast future disease outbreaks. The wheat pathogen is ubiquitous across most wheat production regions distributed across diverse climate zones. We explored the genetic architecture of thermal adaptation using a global collection of 411 strains that were phenotyped across a wide range of temperatures and then included in a genome-wide association study.

View Article and Find Full Text PDF

The apoptosome, a critical protein complex in apoptosis regulation, relies on intricate interactions between its components, particularly the proteins containing the Caspase Activation and Recruitment Domain (CARD). This work presents a thorough computational analysis of the stability and specificity of CARD-CARD interactions within the apoptosome. Departing from available crystal structures, we identify important residues for the interaction between the CARD domains of Apaf-1 and Caspase-9.

View Article and Find Full Text PDF

Spatial mapping of the HCC landscape identifies unique intratumoral perivascular-immune neighborhoods.

Hepatol Commun

November 2024

Human Immunology Laboratory, School of Medical Sciences, Faculty of Medicine and Health, The University of Sydney, Camperdown, New South Wales, Australia.

Background: HCC develops in the context of chronic inflammation; however, the opposing roles the immune system plays in both the development and control of tumors are not fully understood. Mapping immune cell interactions across the distinct tissue regions could provide greater insight into the role individual immune populations have within tumors.

Methods: A 39-parameter imaging mass cytometry panel was optimized with markers targeting immune cells, stromal cells, endothelial cells, hepatocytes, and tumor cells.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!