Prediction of vancomycin initial dosage using artificial intelligence models applying ensemble strategy.

BMC Bioinformatics

Department of Healthcare Administration and Medical Informatics, Kaohsiung Medical University, No. 100, Shin-Chuan 1st Road, Kaohsiung, 807, Taiwan.

Published: March 2023

Background: Antibiotic resistance has become a global concern. Vancomycin is known as the last line of antibiotics, but its treatment index is narrow. Therefore, clinical dosing decisions must be made with the utmost care; such decisions are said to be "suitable" only when both "efficacy" and "safety" are considered. This study presents a model, namely the "ensemble strategy model," to predict the suitability of vancomycin regimens. The experimental data consisted of 2141 "suitable" and "unsuitable" patients tagged with a vancomycin regimen, including six diagnostic input attributes (sex, age, weight, serum creatinine, dosing interval, and total daily dose), and the dataset was normalized into a training dataset, a validation dataset, and a test dataset. AdaBoost.M1, Bagging, fastAdaboost, Neyman-Pearson, and Stacking were used for model training. The "ensemble strategy concept" was then used to arrive at the final decision by voting to build a model for predicting the suitability of vancomycin treatment regimens.

Results: The results of the tenfold cross-validation showed that the average accuracy of the proposed "ensemble strategy model" was 86.51% with a standard deviation of 0.006, and it was robust. In addition, the experimental results of the test dataset revealed that the accuracy, sensitivity, and specificity of the proposed method were 87.54%, 89.25%, and 85.19%, respectively. The accuracy of the five algorithms ranged from 81 to 86%, the sensitivity from 81 to 92%, and the specificity from 77 to 88%. Thus, the experimental results suggest that the model proposed in this study has high accuracy, high sensitivity, and high specificity.

Conclusions: The "ensemble strategy model" can be used as a reference for the determination of vancomycin doses in clinical treatment.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10035120PMC
http://dx.doi.org/10.1186/s12859-022-05117-8DOI Listing

Publication Analysis

Top Keywords

"ensemble strategy
16
strategy model"
12
suitability vancomycin
8
test dataset
8
strategy
5
vancomycin
5
dataset
5
prediction vancomycin
4
vancomycin initial
4
initial dosage
4

Similar Publications

This study aimed to develop and evaluate an efficient method to automatically segment T1- and T2-weighted brain magnetic resonance imaging (MRI) images. We specifically compared the segmentation performance of individual convolutional neural network (CNN) models against an ensemble approach to advance the accuracy of MRI-guided radiotherapy (RT) planning..

View Article and Find Full Text PDF

Efficiently obtaining atomic-scale thermodynamic parameters characterizing crystallization from solution is key to developing the modeling strategies needed in the quest for digital design strategies for industrial crystallization processes. Based on the thermodynamics of crystal nucleation in confined solutions, we develop a simulation framework to efficiently estimate the solubility and surface tension of organic crystals in solution from a few unbiased molecular dynamics simulations at a reference temperature. We then show that such a result can be extended with minimal computational overhead to capture the solubility curve.

View Article and Find Full Text PDF

Human stem cell models for Marfan syndrome: a .

Front Cell Dev Biol

January 2025

Medical Cell Biology Research Group, Department of Human Structure and Repair, Faculty of Medicine and Health Sciences, Ghent University, Ghent, Belgium.

The introduction of pluripotent stem cells into the field of disease modelling resulted in numerous opportunities to study and uncover disease mechanisms in a petri dish. This promising avenue has also been applied to model Marfan syndrome, a disease affecting multiple organ systems, including the skeletal and cardiovascular system. Marfan syndrome is caused by pathogenic variants in , the gene encoding for the extracellular matrix protein fibrillin-1 which ensembles into microfibrils.

View Article and Find Full Text PDF

A hybrid data assimilation method based on real-time Ensemble Kalman filtering and KNN for COVID-19 prediction.

Sci Rep

January 2025

College of Mathematical Sciences, Harbin Engineering University, Nangang District, Heilongjiang, Harbin, 150001, China.

This study introduces a hybrid data assimilation method that significantly improves the predictive accuracy of the time-dependent Susceptible-Exposed-Asymptomatic-Infected-Quarantined-Removed (SEAIQR) model for epidemic forecasting. The approach integrates real-time Ensemble Kalman Filtering (EnKF) with the K-Nearest Neighbors (KNN) algorithm, combining dynamic real-time adjustments with pattern recognition techniques tailored to the specific dynamics of epidemics. This hybrid methodology overcomes the limitations of single-model predictions in the face of increasingly complex transmission pathways in modern society.

View Article and Find Full Text PDF

Epigenetics in Learning and Memory.

Subcell Biochem

January 2025

Faculty of Medicine and Faculty of Life Sciences, Institute of Biomedical Sciences (ICB), Universidad Andres Bello, Santiago, Chile.

In animals, memory formation and recall are essential for their survival and for adaptations to a complex and often dynamically changing environment. During memory formation, experiences prompt the activation of a selected and sparse population of cells (engram cells) that undergo persistent physical and/or chemical changes allowing long-term memory formation, which can last for decades. Over the past few decades, important progress has been made on elucidating signaling mechanisms by which synaptic transmission leads to the induction of activity-dependent gene regulation programs during the different phases of learning (acquisition, consolidation, and recall).

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!