A spectral library of field induced fragmentation (FIF) spectra for 45 oxygen-containing volatile organic compounds from 5 chemical classes was obtained using tandem differential mobility spectrometry (DMS). Protonated monomers were mobility isolated in a first DMS stage, fragmented with electric fields >10,000 V/cm in a middle (or reactive) stage, and mobility characterized in a second DMS stage. Other spectral libraries were obtained for protonated monomers and for complete mobility spectra from a single DMS stage. Neural networks from Python/Tensorflow software, prepared in-house, and from commercial NeuralWorks Professional II/PLUS were trained to assign spectra into a chemical class. The success at classification was determined for familiar and unfamiliar spectra from these three libraries. Classification test scores were best with FIF spectra with >0.99 for familiar compounds and 0.52 for unfamiliar compounds and were consistent with neural network learning of structural information from fragment ions when compared to other spectral libraries. Radar charts are introduced as measures of classification and as a tool to explore mis-classification. This work shows that ion fragmentation with multi-stage tandem DMS portends molecular identification with the portability and robustness of ambient pressure ion mobility analyzers.
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http://dx.doi.org/10.1016/j.aca.2023.341047 | DOI Listing |
Proc Natl Acad Sci U S A
February 2025
Courant Institute for Mathematical Sciences and Department of Biology, New York University, New York, NY 10012.
Accurate chromosome segregation in mitosis depends on proper connections of sister chromatids, through microtubules, to the opposite poles of the early mitotic spindle. Transiently, many inaccurate connections are formed and rapidly corrected throughout the mitotic stages, but a small number of merotelic connections, in which a chromatid is connected to both spindle poles, remain lagging at the spindle's equator in anaphase. Most of the lagging chromatids are eventually moved to one or the other pole, likely by a combination of microtubules' turnover and the brute force of pulling by the microtubules' majority from the one pole against the microtubules' minority from the other pole.
View Article and Find Full Text PDFInt J Gen Med
January 2025
Department of Neurology, Jagiellonian University Medical College, Krakow, Poland.
Introduction: Ultrasonography is increasingly used to diagnose the carpal tunnel syndrome (CTS). Most frequently, the enlargement of the nerve cross-sectional area (CSA) at the tunnel inlet serves to confirm the diagnosis. Recent research has shown that the nerve diameter is decreased within the tunnel, when measured at the level of pisiforme or capitatum.
View Article and Find Full Text PDFPoult Sci
January 2025
Shandong Provincial Key laboratory for Livestock Germplasm Innovation & Utilization, College of Animal Science and Technology, Shandong Agricultural University, 61 Daizong Street, Taian City, Shandong Province 271018, PR China. Electronic address:
Eggshells not only protect the contents of the egg from external damage but are also a key factor influencing consumer choice, second only to price. In the later stages of egg production, the incidence of pimpled eggs significantly increases, severely affecting the hatchability and food safety of the eggs. This study compares the differences in the uterine proteomes and metabolomes of hens producing pimpled eggs and those producing normal eggs, aiming to identify the proteins and metabolites that may play a crucial role in the formation of pimpled eggs.
View Article and Find Full Text PDFSci Rep
December 2024
Departments of Animal and Food Sciences, Biological Sciences, Medical and Molecular Sciences, and Microbiology Graduate Program, University of Delaware, Newark, DE, USA.
The transcriptional regulation of gene expression in the latter stages of follicular development in laying hen ovarian follicles is not well understood. Although differentially expressed genes (DEGs) have been identified in pre-recruitment and pre-ovulatory stages, the master regulators driving these DEGs remain unknown. This study addresses this knowledge gap by utilizing Master Regulator Analysis (MRA) combined with the Algorithm for the Reconstruction of Accurate Cellular Networks (ARACNe) for the first time in laying hen research to identify master regulators that are controlling DEGs in pre-recruitment and pre-ovulatory phases.
View Article and Find Full Text PDFMetabolites
November 2024
Department of Intensive Care Medicine, Institute of Science Tokyo, 1-5-45 Yushima, Bunkyo City 113-8510, Japan.
A dysregulated metabolism has been studied as a key aspect of the COVID-19 pathophysiology, but its longitudinal progression in severe cases remains unclear. In this study, we aimed to investigate metabolic dysregulation over time in patients with severe COVID-19 requiring mechanical ventilation (MV). In this single-center, prospective, observational study, we obtained 236 serum samples from 118 adult patients on MV in an ICU.
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