Dissolved organic matter (DOM) is the most reactive pool of organic carbon in soil and one of the most important components of the global carbon cycle. Phototrophic biofilms growing at the soil-water interface in periodically flooding-drying soils like paddy fields consume and produce DOM during their growth and decomposition. However, the effects of phototrophic biofilms on DOM remain poorly understood in these settings. Here, we found that phototrophic biofilms transformed DOM similarly despite differences in soil types and initial DOM compositions, with stronger effects on DOM molecular composition than soil organic carbon and nutrient contents. Specifically, growth of phototrophic biofilms, especially those genera belonging to Proteobacteria and Cyanobacteria, increased the abundance of labile DOM compounds and richness of molecular formulae, while biofilm decomposition decreased the relative abundance of labile components. After a growth and decomposition cycle, phototrophic biofilms universally drove the accumulation of persistent DOM compounds in soil. Our results revealed how phototrophic biofilms shape the richness and changes in soil DOM at the molecular level and provide a reference for using phototrophic biofilms to increase DOM bioactivity and soil fertility in agricultural settings.
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http://dx.doi.org/10.1021/acs.est.2c08541 | DOI Listing |
Sci Total Environ
January 2025
Geosciences and Environment Toulouse, Université de Toulouse, CNRS, Université Toulouse 3 Paul Sabatier (UPS), 14 Avenue Edouard Belin, 31400 Toulouse, France; BIO-GEO-CLIM Laboratory, Tomsk State University, 36 Lenin Ave, 634050, Tomsk, Russia. Electronic address:
Copper (Cu) and zinc (Zn) are two trace metals that exhibit both limiting and toxic effects on aquatic microorganisms. However, in contrast to good knowledge of these metal interactions with individual microbial cultures, the biofilm, complex natural consortium of microorganisms, remains poorly understood with respect to its control on Cu and Zn in the aquatic environments. Towards constraining the magnitude and mechanisms of Cu and Zn isotope fractionation in the presence of phototrophic biofilms composed of different proportion of diatoms, green algae and cyanobacteria, we studied long-term growth in a rotating annular bioreactor and quantified the uptake of metals and their isotope fractionation at environmentally-relevant Cu and Zn concentrations.
View Article and Find Full Text PDFBiotechnol Rep (Amst)
December 2024
Division of Sustainable Development, College of Science and Engineering, Hamad bin Khalifa University, Qatar Foundation, Doha, Qatar.
This research looked at how three different light intensities (1600, 4300, and 7200 lx) affect the biomass development, treatment of fuel synthesis wastewater and the recovery of valuable bioproducts between biofilm and suspended growth in a purple-bacteria enriched photobioreactor. Each condition was run in duplicate using an agricultural shade cloth as the biofilm support media in a continuously mixed batch reactor. The results showed that the highest chemical oxygen demand (COD) removal rate (56.
View Article and Find Full Text PDFbioRxiv
November 2024
Interfaculty Institute of Microbiology and Infection Medicine, Organismic Interactions Department, Cluster of Excellence "Controlling Microbes to Fight Infections", Eberhard Karls University of Tübingen, 72076 Tübingen, Germany.
Cyclic dimeric GMP (c-di-GMP) is a widespread bacterial second messenger that controls a variety of cellular functions, including protein and polysaccharide secretion, motility, cell division, cell development, and biofilm formation, and contributes to the virulence of some important bacterial pathogens. While the genes for diguanylate cyclases and c-di-GMP hydrolases (active or mutated) can be easily identified in microbial genomes, the list of c-di-GMP receptor domains is quite limited, and only two of them, PliZ and MshEN, are found across multiple bacterial phyla. Recently, a new c-di-GMP receptor protein, named CdgR or ComFB, has been identified in cyanobacteria and shown to regulate their cell size and, more recently, natural competence.
View Article and Find Full Text PDFMicrob Ecol
November 2024
CRETUS, Department of Chemical Engineering, University of Santiago de Compostela, Campus Vida, Galicia, 15782, Santiago de Compostela, Spain.
Recent studies are showing that some lights suitable for illuminating the urban fabric (i.e. that do not include the red, green and blue sets of primary colours) may halt biological colonisation on monuments, mainly that caused by phototrophic subaerial biofilms (SABs), which may exacerbate the biodeterioration of substrates.
View Article and Find Full Text PDFCommun Biol
November 2024
Department of Chemical and Environmental Engineering, High School of Experimental Sciences and Technology, University Rey Juan Carlos, Madrid, Spain.
Reducing greenhouse gas emissions is critical for humanity nowadays, but it can be beneficial by developing engineered systems that valorize CO into commodities, thus mimicking nature's wisdom. Purple phototrophic bacteria (PPB) naturally accept CO into their metabolism as a primary redox sink system in photo-heterotrophy. Dedicated use of this feature for developing sustainable processes (e.
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