The wide diversity among the carbohydrate-active enzymes (CAZymes) reflects the equally broad versatility in terms of composition and chemicals bonds found in the plant cell wall polymers on which they are active. This diversity is also expressed through the various strategies developed to circumvent the recalcitrance of these substrates to biological degradation. Glycoside hydrolases (GHs) are the most abundant of the CAZymes and are expressed as isolated catalytic modules or in association with carbohydrate-binding module (CBM), acting in synergism within complex arrays of enzymes. This multimodularity can be even more complex. The cellulosome presents a scaffold protein immobilized to the outer membrane of some microorganisms on which enzymes are grafted to prevent their dispersion and increase catalytic synergism. In polysaccharide utilization loci (PUL), GHs are also distributed across the membranes of some bacteria to co-ordinate the deconstruction of polysaccharides and the internalization of metabolizable carbohydrates. Although the study and characterization of these enzymatic activities need to take into account the entirety of this complex organization-in particular because of the dynamics involved in it-technical problems limit the present study to isolated enzymes. However, these enzymatic complexes also have a spatiotemporal organization, whose still neglected aspect must be considered. In the present review, the different levels of multimodularity that can occur in GHs will be reviewed, from its simplest forms to the most complex. In addition, attempts to characterize or study the effect on catalytic activity of the spatial organization within GHs will be addressed.
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Cell Rep
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Josep Carreras Leukaemia Research Institute (IJC), Badalona, Spain; Barcelona Supercomputing Center (BSC), Barcelona, Spain. Electronic address:
Tumors are complex ecosystems of interacting cell types. The concept of cancer hallmarks distills this complexity into underlying principles that govern tumor growth. Here, we explore the spatial distribution of cancer hallmarks across 63 primary untreated tumors from 10 cancer types using spatial transcriptomics.
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Department of Pathology, Dana-Farber Cancer Institute, Boston, MA, USA; Broad Institute, Cambridge, MA, USA; Department of Pathology, Harvard Medical School, Boston, MA, USA. Electronic address:
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January 2025
Shanghai Institute of Hematology, State Key Laboratory of Medical Genomics, National Research Center for Translational Medicine at Shanghai, Research Unit of Hematologic Malignancies Genomics and Translational Research of Chinese Academy of Medical Sciences, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China.
Single-cell RNA sequencing (scRNA-seq) and spatial transcriptomics (ST) techniques hold great value in evaluating the heterogeneity and spatial characteristics of hematopoietic cells within tissues. These two techniques are highly complementary, with scRNA-seq offering single-cell resolution and ST retaining spatial information. However, there is an urgent demand for well-organized and user-friendly toolkits capable of handling single-cell and spatial information.
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Department of Agricultural Machinery Engineering, Graduate School, Chungnam National University, Daejeon 34134, Republic of Korea.
Efficient management of soil nutrients is essential for optimizing crop production, ensuring sustainable agricultural practices, and addressing the challenges posed by population growth and environmental degradation. Smart agriculture, using advanced technologies, plays an important role in achieving these goals by enabling real-time monitoring and precision management of nutrients. In open-field soil cultivation, spatial variability in soil properties demands site-specific nutrient management and integration with variable-rate technology (VRT) to optimize fertilizer application, reduce nutrient losses, and enhance crop yields.
View Article and Find Full Text PDFInsects
January 2025
Department of Entomology and Nematology, University of California, Davis, 1 Shields Ave, Davis, CA 95616, USA.
Many social and environmental variables can affect the interactions among individuals in an insect colony that fundamentally structure its social organization. Along with important attributes such as age and caste, immunity-related factors such as the performance of sanitary tasks or exposure to a pathogen can also influence an individual's social interactions and their place in the resulting social network. Most work on this subject has supported the hypothesis that health-compromised individuals will exhibit altered social or spatial behavior that presumably limits the spread of infection.
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