A tetrahedral FeL cage assembled from the coordination of triangular chiral, face-capping ligands to iron(II). This cage exists as two diastereomers in solution, which differ in the stereochemistry of their metal vertices, but share the same point chirality of the ligand. The equilibrium between these cage diastereomers was subtly perturbed by guest binding. This perturbation from equilibrium correlated with the size and shape fit of the guest within the host; insight as to the interplay between stereochemistry and fit was provided by atomistic well-tempered metadynamics simulations. The understanding thus gained as to the stereochemical impact on guest binding enabled the design of a straightforward process for the resolution of the enantiomers of a racemic guest.
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http://dx.doi.org/10.1021/jacs.3c00294 | DOI Listing |
Molecules
July 2023
Key Laboratory of Orogenic Belts and Crustal Evolution, Ministry of Education, The School of Earth and Space Sciences, Peking University, Beijing 100871, China.
Protein folding is a process in which a polypeptide must undergo folding process to obtain its three-dimensional structure. Thermodynamically, it is a process of enthalpy to overcome the loss of conformational entropy in folding. Folding is primarily related to hydrophobic interactions and intramolecular hydrogen bondings.
View Article and Find Full Text PDFMolecules
August 2022
Department of Chemistry, Faculty of Engineering and Technology, SRM Institute of Science and Technology, Kattankulathur 603203, Tamil Nadu, India.
Choline geranate (CAGE) ionic liquids (ILs) stabilize insulin, thereby aiding its oral delivery, whereas ethanol (EtOH) affects its stability by disrupting the hydrophobic interactions. In this study, cognizance of the stabilization mechanism of insulin dimer in the presence of both CAGE ILs and EtOH mixtures is achieved through biased and unbiased molecular dynamics (MD) simulations. Here, two order parameters are employed to study the insulin dimer dissociation using well-tempered metadynamics (WT-MetaD).
View Article and Find Full Text PDFJ Chem Theory Comput
January 2019
Center for Computational Sciences , University of Tsukuba, 1-1-1 Tennodai , Tsukuba , Ibaraki 305-8577 , Japan.
A protocol for calculating free energy landscapes (FELs) is proposed based on a combination of two cascade-type molecular dynamics (MD) methods, parallel cascade selection MD (PaCS-MD) and outlier flooding method (OFLOOD), with the help of a Markov state model (MSM). The former rapidly generates approximated transition paths directly connecting reactants with products, and the latter complementary resamples marginal conformational subspaces. Trajectories obtained by them give reliable microstates in MSM providing accurate FEL with low computational costs.
View Article and Find Full Text PDFInorg Chem
April 2018
EaStCHEM School of Chemistry , University of Edinburgh, David Brewster Road , Edinburgh EH9 3FJ , U.K.
The reaction of the simple metalloligand [FeL] [HL = 1-(4-pyridyl)butane-1,3-dione] with a variety of different M salts results in the formation of a family of heterometallic cages of formulae [FePdL]Cl (1), [FeCuL(HO)Br]Br (2), [FeCuL(HO)](NO) (3), [FeNiL(SCN)Cl] (4), and [FeCoL(SCN)(HO)]Cl (5). The metallic skeleton of each cage describes a cube in which the Fe ions occupy the eight vertices and the M ions lie at the center of the six faces. Direct-current magnetic susceptibility and magnetization measurements on 3-5 reveal the presence of weak antiferromagnetic exchange between the metal ions in all three cases.
View Article and Find Full Text PDFChemistry
July 2017
Inorganic and Physical Chemistry Department, Indian Institute of Science, Bangalore-, 560012, India.
Two neutral tripodal metalloligands (CoL and FeL where L=C H N ) containing a clathrochelate core were synthesized and characterized in one-step. Reactions of these ligands with three different metal acceptors cis-(tmen)Pd(NO ) (tmen = tetramethylethylenediamine), Zn(NO ) and Mn(ClO ) separately yielded a series of heterometallic coordination cages (1 a-3 a and 1 b-3 b) in high yields. Depending on the nature of coordination geometry of the acceptors, the resulting assemblies have trigonal- bipyramidal (1 a/1 b), open-cubic (2 a/2 b), and closed-cubic structures (3 a/3 b).
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