[Identification of gene family in Ziyang Xiangcheng rootstock and expression pattern analysis].

Sheng Wu Gong Cheng Xue Bao

National Citrus Engineering Research Center, Citrus Research Institute, Southwest University, Chongqing 400712, China.

Published: February 2023

Squamosa promoter binding protein-like (SPL) family is a group of important transcription factors involved in the regulation of plant growth and development and the response to environmental stress, but there are few studies in perennial fruit trees such as citrus. In this study, Ziyang Xiangcheng ( Sib.ex Tanaka), an important rootstock of Citrus, was used as the material for analysis. Based on plantTFDB transcription factor database and sweet orange genome database, 15 family members were genome-widely identified and cloned from Ziyang Xiangcheng, and named -. Sequence analysis showed that the open reading frame (ORF) length of ranged from 393 bp to 2 865 bp, encoding 130-954 amino acids. Phylogenetic tree divided 15 into 9 subfamilies. Gene structure and conserved domain analysis predicted 20 different conserved motifs and SBP basic domains. Analysis of -acting promoter elements predicted 20 different promoter elements, including those related to plant growth and development, abiotic stress and secondary metabolites. The expression patterns of under drought, salt and low temperature stresses were analyzed by real-time fluorescence quantitative PCR (qRT-PCR), and many were significantly up-regulated after stress treatment. This study provides a reference for further study on the function of SPL family transcription factors in citrus and other fruit trees.

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http://dx.doi.org/10.13345/j.cjb.220672DOI Listing

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