This study investigated the origins and maintenance of biodiversity by integrating ecological and evolutionary mechanisms into a spatially-explicit synthesis between niche-based processes and neutral dynamics (ND). An individual-based model on a two-dimensional grid with periodic boundary conditions was used to compare a niche-neutral continuum induced in contrasting spatial and environmental settings while characterizing the operational scaling of deterministic-stochastic processes. The spatially-explicit simulations revealed three major findings. First, the number of guilds in a system approaches a stationary state and the species composition in a system converges to a dynamic equilibrium of ecologically-equivalent species generated by the speciation-extinction balance. This convergence of species composition can be argued under a point mutation mode of speciation and niche conservatism due to the duality of ND. Second, the dispersal modes of biota may affect how the influence of environmental filtering changes across ecological-evolutionary scales. This influence is greatest in compactly-packed areas within biogeographic units for large-bodied active dispersers, such as fish. Third, the species are filtered along the environmental gradient and the coexistence of ecologically-different species in each local community in a homogeneous environment is allowed by dispersals in a set of local communities. Therefore, the ND among the single-guild species, extinction-colonization trade-off among species of similar environmental optima and different levels of specialization, and mass effect, such as weak species-environment associations, operate simultaneously in patchy habitats. In spatially-explicit synthesis, characterizing where a metacommunity falls along a niche-neutral continuum is too superficial and involves an abstraction that any biological process is probabilistic; therefore, they are dynamic-stochastic processes. The general patterns observed in the simulations allowed a theoretical synthesis of a metacommunity and explained the complex patterns observed in the real world.
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http://dx.doi.org/10.1002/ece3.9754 | DOI Listing |
New Phytol
November 2023
Département des Sciences Biologiques, Université du Québec à Montréal, Montréal, Québec, H2X 1Y4, Canada.
Predicting and managing the structure and function of plant microbiomes requires quantitative understanding of community assembly and predictive models of spatial distributions at broad geographic scales. Here, we quantified the relative contribution of abiotic and biotic factors to the assembly of phyllosphere bacterial communities, and developed spatial distribution models for keystone bacterial taxa along a latitudinal gradient, by analyzing 16S rRNA gene sequences from 1453 leaf samples taken from 329 plant species in China. We demonstrated a latitudinal gradient in phyllosphere bacterial diversity and community composition, which was mostly explained by climate and host plant factors.
View Article and Find Full Text PDFEcol Evol
February 2023
Centro de Investigación de Recursos Acuáticos (CIRA) Universidad Autónoma del Beni Trinidad Beni Bolivia.
This study investigated the origins and maintenance of biodiversity by integrating ecological and evolutionary mechanisms into a spatially-explicit synthesis between niche-based processes and neutral dynamics (ND). An individual-based model on a two-dimensional grid with periodic boundary conditions was used to compare a niche-neutral continuum induced in contrasting spatial and environmental settings while characterizing the operational scaling of deterministic-stochastic processes. The spatially-explicit simulations revealed three major findings.
View Article and Find Full Text PDFEvol Bioinform Online
November 2022
Computational Biology and Medical Ecology Lab, State Key Lab of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Science, Kunming, Yunnan, China.
It is postulated that the human digestive tract (DT) from mouth to intestine is differentiated into diverse niches. For example, Segata et al. discovered that the microbiomes of diverse habitats along the DT could be distinguished as 4 types (niches) including (i) stool; (ii) sub-gingival plaques (SubP) and supra-gingival plaques (SupP); (iii) tongue dorsum (TD), throat (TH), palatine tonsils (PT), and saliva (Sal); and (iv) hard palate (HP) and buccal mucosa (BM), and keratinized gingiva (KG).
View Article and Find Full Text PDFAbstractAn understanding of the mechanisms that facilitate coexistence in ecological communities poses a major challenge to theoretical ecology. A popular paradigmatic scheme distinguishes between two qualitatively different processes that help species to coexist: stabilizing mechanisms increase niche differentiation, making the intraspecific competition stronger than the interspecific one, while equalizing mechanisms diminish fitness differences, making the competition less decisive. Here, we provide an analytic and numeric examination of the quantitative features associated with this scheme for a simple, two-species competition model.
View Article and Find Full Text PDFFront Microbiol
July 2022
Computational Biology and Medical Ecology Lab, State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.
The human digestive tract (DT) is differentiated into diverse niches and harbors the greatest microbiome diversity of our bodies. Segata et al. (2012) found that the microbiome of diverse habitats along the DT may be classified as four categories or niches with different microbial compositions and metabolic potentials.
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