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Taxonomic Positions and Secondary Metabolite-Biosynthetic Gene Clusters of Akazaoxime- and Levantilide-Producers. | LitMetric

Taxonomic Positions and Secondary Metabolite-Biosynthetic Gene Clusters of Akazaoxime- and Levantilide-Producers.

Life (Basel)

Biotechnology Research Center and Department of Biotechnology, Toyama Prefectural University, Toyama 939-0398, Japan.

Published: February 2023

sp. AKA109 is a producer of akazaoxime and A-76356, whereas sp. AKA38 is that of levantilide C. We aimed to clarify their taxonomic positions and identify biosynthetic gene clusters (BGCs) of these compounds. In 16S rRNA gene and DNA gyrase subunit B gene () sequence analyses, strains AKA109 and AKA38 were the most closely related to MMS20-R2-29 and HKI0641, respectively. Although sp. AKA109 was identified as by the sequence similarity and DNA-DNA relatedness based on whole genome sequences, sp. AKA38 was classified to a new genomospecies. AKA109 harbored six type-I polyketide synthase (PKS), one type-II PKS, one type-III PKS, three non-ribosomal peptide synthetase (NRPS) and three hybrid PKS/NRPS gene clusters, among which the BGC of akazaoxime and A-76356 was identified. These gene clusters are conserved in MMS20-R2-29 sp. AKA38 harbored two type-I PKS, one of which was responsible for levantilide C, one type-II PKS, one type-III PKS, two NRPS and five hybrid PKS/NRPS gene clusters. We predicted products derived from these gene clusters through bioinformatic analyses. Consequently, these two strains are revealed to be promising sources for diverse non-ribosomal peptide and polyketide compounds.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9967187PMC
http://dx.doi.org/10.3390/life13020542DOI Listing

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