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http://dx.doi.org/10.3389/fgene.2023.1140534 | DOI Listing |
Nat Cancer
January 2025
Department of Hematopoietic Biology and Malignancy, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Immune checkpoint inhibitors can lead to 'exceptional', durable responses in a subset of persons. However, the molecular basis of exceptional response (ER) to immunotherapy in metastatic clear cell renal cell carcinoma (mccRCC) has not been well characterized. Here we analyzed pretherapy genomic and transcriptomic data in treatment-naive persons with mccRCC treated with standard-of-care immunotherapies: (1) combination of programmed cell death protein and ligand 1 (PD1/PDL1) and cytotoxic T lymphocyte-associated protein 4 inhibitors (IO/IO) or (2) combination of PD1/PDL1 and vascular endothelial growth factor (VEGF) receptor inhibitors (IO/VEGF).
View Article and Find Full Text PDFNat Med
January 2025
Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.
The integration of large language models (LLMs) into clinical diagnostics has the potential to transform doctor-patient interactions. However, the readiness of these models for real-world clinical application remains inadequately tested. This paper introduces the Conversational Reasoning Assessment Framework for Testing in Medicine (CRAFT-MD) approach for evaluating clinical LLMs.
View Article and Find Full Text PDFGenome Biol
December 2024
Australian Centre for Blood Diseases, Monash University, Melbourne, VIC, 3004, Australia.
Cell types are traditionally thought to be specified and stabilized by gene regulatory networks. Here, we explore how chromatin memory contributes to the specification and stabilization of cell states. Through pervasive, local, feedback loops, chromatin memory enables cell states that were initially unstable to become stable.
View Article and Find Full Text PDFCurr Opin Insect Sci
December 2024
Department of Entomology, College of Plant Protection, China Agricultural University, Beijing, China. Electronic address:
Social insects often show remarkable behavioral plasticity, which is closely associated with their respective castes. The underpinnings of this plasticity are complex, involving genetic differences among individuals within a colony and regulation of gene expression at multiple levels. Post-transcriptional regulation, which increases the complexity of the transcriptome, plays a crucial role in the multilayer regulatory network that influences social insect behavior.
View Article and Find Full Text PDFCurr Opin Plant Biol
December 2024
Instituto de Biología Molecular y Celular de Plantas (IBMCP), CSIC-Universitat Politécnica de Valéncia, Valencia, Spain. Electronic address:
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