High-expression of the innate-immune related gene UNC93B1 predicts inferior outcomes in acute myeloid leukemia.

Front Genet

Regenerative Medicine Clinic, State Key Laboratory of Experimental Hematology, National Clinical Research Center for Blood Diseases, Haihe Laboratory of Cell Ecosystem, Institute of Hematology and Blood Diseases Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, Tianjin, China.

Published: January 2023

Acute myeloid leukemia (AML) is a heterogeneous hematological malignancy with dismal prognosis. Identification of better biomarkers remained a priority to improve established stratification and guide therapeutic decisions. Therefore, we extracted the RNA sequence data and clinical characteristics of AML from The Cancer Genome Atlas (TCGA) and Genotype-Tissue Expression database (GTEx) to identify the key factors for prognosis. We found was highly expressed in AML patients and significantly linked to poor clinical features ( < 0.05). We further validated the high expression of in another independent AML cohort from GEO datasets ( < 0.001) and performed quantitative PCR of patient samples to confirm the overexpression of in AML ( < 0.005). Moreover, we discovered high level of was an independent prognostic factor for poorer outcome both in univariate analysis and multivariate regression ( < 0.001). Then we built a nomogram model based on expression, age, FAB subtype and cytogenetic risk, the concordance index of which for predicting overall survival was 0.729 ( < 0.001). Time-dependent ROC analysis for predicting survival outcome at different time points by showed the cumulative 2-year survival rate was 43.7%, and 5-year survival rate was 21.9%. The differentially expressed genes (DEGs) between two groups divided by expression level were enriched in innate immune signaling and metabolic process pathway. Protein-protein interaction (PPI) network indicated four hub genes (, , and ) interacted with , three of which were also significantly linked to inferior outcome. Furthermore, we discovered high tended to be infiltrated by innate immune cells, including Macrophages, Dendritic cells, Neutrophils, Eosinophils, and NK CD56dim cells. We also found had a significantly positive correlation with , and almost all Toll-like receptors. Finally, we revealed negatively correlated expression of and in AML and conjectured that high-UNC93B1 monocytic AML is more resistant to venetoclax. And we found high expression compensated for loss, thus, we proposed MCL-1 inhibitor might overcome the resistance of venetoclax in AML. Altogether, our findings demonstrated the utility of as a powerful poor prognostic predictor and alternative therapeutic target.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9891309PMC
http://dx.doi.org/10.3389/fgene.2023.1063227DOI Listing

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