Recently, large, high-quality public datasets have led to the development of convolutional neural networks that can detect lymph node metastases of breast cancer at the level of expert pathologists. Many cancers, regardless of the site of origin, can metastasize to lymph nodes. However, collecting and annotating high-volume, high-quality datasets for every cancer type is challenging. In this paper we investigate how to leverage existing high-quality datasets most efficiently in multi-task settings for closely related tasks. Specifically, we will explore different training and domain adaptation strategies, including prevention of catastrophic forgetting, for breast, colon and head-and-neck cancer metastasis detection in lymph nodes. Our results show state-of-the-art performance on colon and head-and-neck cancer metastasis detection tasks. We show the effectiveness of adaptation of networks from one cancer type to another to obtain multi-task metastasis detection networks. Furthermore, we show that leveraging existing high-quality datasets can significantly boost performance on new target tasks and that catastrophic forgetting can be effectively mitigated.Last, we compare different mitigation strategies.

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.media.2023.102755DOI Listing

Publication Analysis

Top Keywords

high-quality datasets
12
metastasis detection
12
detection lymph
8
lymph node
8
node metastases
8
lymph nodes
8
cancer type
8
existing high-quality
8
catastrophic forgetting
8
colon head-and-neck
8

Similar Publications

GDBr: genomic signature interpretation tool for DNA double-strand break repair mechanisms.

Nucleic Acids Res

January 2025

Department of Convergent Bioscience and Informatics, College of Bioscience and Biotechnology, Chungnam National University, 99, Daehak-ro, Yuseong-gu, Daejeon 34134, Republic of Korea.

Large genetic variants can be generated via homologous recombination (HR), such as polymerase theta-mediated end joining (TMEJ) or single-strand annealing (SSA). Given that these HR-based mechanisms leave specific genomic signatures, we developed GDBr, a genomic signature interpretation tool for DNA double-strand break repair mechanisms using high-quality genome assemblies. We applied GDBr to a draft human pangenome reference.

View Article and Find Full Text PDF

Integrating Model-Informed Drug Development With AI: A Synergistic Approach to Accelerating Pharmaceutical Innovation.

Clin Transl Sci

January 2025

Global Biometrics and Data Management, Pfizer Research and Development, New York, New York, USA.

The pharmaceutical industry constantly strives to improve drug development processes to reduce costs, increase efficiencies, and enhance therapeutic outcomes for patients. Model-Informed Drug Development (MIDD) uses mathematical models to simulate intricate processes involved in drug absorption, distribution, metabolism, and excretion, as well as pharmacokinetics and pharmacodynamics. Artificial intelligence (AI), encompassing techniques such as machine learning, deep learning, and Generative AI, offers powerful tools and algorithms to efficiently identify meaningful patterns, correlations, and drug-target interactions from big data, enabling more accurate predictions and novel hypothesis generation.

View Article and Find Full Text PDF

Soil colour is a key indicator of soil health and the associated properties. In agriculture, soil colour provides farmers and advises with a visual guide to interpret soil functions and performance. Munsell colour charts have been used to determine soil colour for many years, but the process is fallible, as it depends on the user's perception.

View Article and Find Full Text PDF

WGAN-GP for Synthetic Retinal Image Generation: Enhancing Sensor-Based Medical Imaging for Classification Models.

Sensors (Basel)

December 2024

Computer Science Department, Instituto Nacional de Astrofísica Óptica y Electrónica, Luis Enrrique Erro No. 1, Sta. María Tonantzintla, Puebla 72840, Mexico.

Accurate synthetic image generation is crucial for addressing data scarcity challenges in medical image classification tasks, particularly in sensor-derived medical imaging. In this work, we propose a novel method using a Wasserstein Generative Adversarial Network with Gradient Penalty (WGAN-GP) and nearest-neighbor interpolation to generate high-quality synthetic images for diabetic retinopathy classification. Our approach enhances training datasets by generating realistic retinal images that retain critical pathological features.

View Article and Find Full Text PDF

Monitoring of single-nucleus chromatin landscape of ischemic stroke in mouse cerebral cortex across time.

Sci Data

January 2025

Hubei Clinical Research Center of Central Nervous System Repair and Functional Reconstruction, Taihe Hospital, Hubei University of Medicine, Shiyan, Hubei, 442000, China.

Ischemic stroke constitutes a multifaceted neurological affliction that spans various cellular types. Lack of dynamic chromatin accessibility data after stroke is one of the obstacles to understanding this process. To gain insights into the variations in transcriptional regulation among various cell types subsequent to a stroke, we employed single-nucleus ATAC-seq to curate a chromatin accessibility compendium from the cerebral cortex of mice subjected to middle cerebral artery occlusion/reperfusion (MCAO/R).

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!