An accurate and efficient automatic brain tumor segmentation algorithm is important for clinical practice. In recent years, there has been much interest in automatic segmentation algorithms that use convolutional neural networks. In this paper, we propose a novel hierarchical multi-scale segmentation network (HMNet), which contains a high-resolution branch and parallel multi-resolution branches. The high-resolution branch can keep track of the brain tumor's spatial details, and the multi-resolution feature exchange and fusion allow the network's receptive fields to adapt to brain tumors of different shapes and sizes. In particular, to overcome the large computational overhead caused by expensive 3D convolution, we propose a lightweight conditional channel weighting block to reduce GPU memory and improve the efficiency of HMNet. We also propose a lightweight multi-resolution feature fusion (LMRF) module to further reduce model complexity and reduce the redundancy of the feature maps. We run tests on the BraTS 2020 dataset to determine how well the proposed network would work. The dice similarity coefficients of HMNet for ET, WT, and TC are 0.781, 0.901, and 0.823, respectively. Many comparative experiments on the BraTS 2020 dataset and other two datasets show that our proposed HMNet has achieved satisfactory performance compared with the SOTA approaches.
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http://dx.doi.org/10.3390/jcm12020538 | DOI Listing |
Brief Bioinform
November 2024
Digital Medical Research Center, School of Basic Medical Sciences, Fudan University, 131 Dong'an Road, 200032 Shanghai, China.
Proteins can be represented in different data forms, including sequence, structure, and surface, each of which has unique advantages and certain limitations. It is promising to fuse the complementary information among them. In this work, we propose a framework called ProteinF3S for enzyme function prediction that fuses the complementary information across protein sequence, structure, and surface.
View Article and Find Full Text PDFEnviron Int
December 2024
Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA; Irset Institut de Recherche en Santé, Environnement et Travail, UMR-S 1085, Inserm, University of Rennes, EHESP, Rennes, France.
Understanding effects of extreme heat across diverse settings is critical as social determinants play an important role in modifying heat-related risks. We apply a multi-scale analysis to understand spatial variation in the effects of heat across Mexico and explore factors that are explaining heterogeneity. Daily all-cause mortality was collected from the Mexican Secretary of Health and municipality-specific extreme heat events were estimated using population-weighted temperatures from 1998 to 2019 using Daymet and WorldPop datasets.
View Article and Find Full Text PDFBiomed Opt Express
December 2024
Department of Ophthalmology, University of Pittsburgh, Pittsburgh, PA 15213, USA.
Visible light optical coherence tomography (vis-OCT) is gaining traction for retinal imaging due to its high resolution and functional capabilities. However, the significant absorption of hemoglobin in the visible light range leads to pronounced shadow artifacts from retinal blood vessels, posing challenges for accurate layer segmentation. In this study, we present BreakNet, a multi-scale Transformer-based segmentation model designed to address boundary discontinuities caused by these shadow artifacts.
View Article and Find Full Text PDFAdv Mater
December 2024
School of Energy and Environment, City University of Hong Kong, Kowloon, 999077, Hong Kong.
Solar steam generation (SSG) presents a promising approach to addressing the global water crisis. Central to SSG is solar photothermal conversion that requires efficient light harvesting and management. Hierarchical structures with multi-scale light management are therefore crucial for SSG.
View Article and Find Full Text PDFJ Imaging Inform Med
December 2024
Hong Duc University, 565 Quang Trung, Dong Ve Ward, Thanh Hoa, 40000, Thanh Hoa, Viet Nam.
This study introduces ColonNeXt, a novel fully convolutional attention-based model for polyp segmentation from colonoscopy images, aimed at the enhancing early detection of colorectal cancer. Utilizing a purely convolutional neural network (CNN), ColonNeXt integrates an encoder-decoder structure with a hierarchical multi-scale context-aware network (MSCAN) in the encoder and a convolutional block attention module (CBAM) in the decoder. The decoder further includes a proposed CNN-based feature attention mechanism for selective feature enhancement, ensuring precise segmentation.
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