Microtubules are dynamic polymers that undergo stochastic transitions between growing and shrinking phases. The structural and chemical properties of these phases remain poorly understood. The transition from growth to shrinkage, termed catastrophe, is not a first-order reaction but rather a multistep process whose frequency increases with the growth time: the microtubule ages as the older microtubule tip becomes more unstable. Aging shows that the growing phase is not a single state but comprises several substates of increasing instability. To investigate whether the shrinking phase is also multistate, we characterized the kinetics of microtubule shrinkage following catastrophe using an in vitro reconstitution assay with purified tubulins. We found that the shrinkage speed is highly variable across microtubules and that the shrinkage speed of individual microtubules slows down over time by as much as several fold. The shrinkage slowdown was observed in both fluorescently labeled and unlabeled microtubules as well as in microtubules polymerized from tubulin purified from different species, suggesting that the shrinkage slowdown is a general property of microtubules. These results indicate that microtubule shrinkage, like catastrophe, is time dependent and that the shrinking microtubule tip passes through a succession of states of increasing stability. We hypothesize that the shrinkage slowdown is due to destabilizing events that took place during growth, which led to multistep catastrophe. This suggests that the aging associated with growth is also manifested during shrinkage, with the older, more unstable growing tip being associated with a faster depolymerizing shrinking tip.
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http://dx.doi.org/10.1016/j.bpj.2023.01.020 | DOI Listing |
Biophys J
February 2023
Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut. Electronic address:
Microtubules are dynamic polymers that undergo stochastic transitions between growing and shrinking phases. The structural and chemical properties of these phases remain poorly understood. The transition from growth to shrinkage, termed catastrophe, is not a first-order reaction but rather a multistep process whose frequency increases with the growth time: the microtubule ages as the older microtubule tip becomes more unstable.
View Article and Find Full Text PDFJ Chem Phys
December 2022
Department of Physics and Information Technology, Kyushu Institute of Technology, Iizuka 820-8502, Japan.
Sci Total Environ
May 2021
College of Resources, Environment and Tourism, Capital Normal University, Beijing 100048, China; Key laboratory of 3D Information Acquisition and Application of Ministry, Beijing 100048, China; Beijing Key Laboratory of Resources Environment and GIS, Beijing 100048, China; Beijing Laboratory of Water Resources Security, Beijing 10048, China.
The tidal creek is an important part of the intertidal zone, which maintains the balance between depositional processes and a given hydrodynamic environment. Much can be inferred about the development and evolution of a tidal creek by examining its morphometry characteristics; this information can also provide scientific decision support for the development and utilization of coastal tidal flats. In this study, we propose a complete system of large-scale tidal creek morphometry characteristic extraction algorithms.
View Article and Find Full Text PDFSci Rep
August 2020
Center for Integrated Nanotechnologies, Sandia National Laboratories, Albuquerque, NM, 87185, USA.
Dynamic instability of microtubules is characterized by stochastically alternating phases of growth and shrinkage and is hypothesized to be controlled by the conformation and nucleotide state of tubulin dimers within the microtubule lattice. Specifically, conformation changes (compression) in the tubulin dimer following the hydrolysis of GTP have been suggested to generate stress and drive depolymerization. In the present study, molecular dynamics simulations were used in tandem with in vitro experiments to investigate changes in depolymerization based on the presence of islands of uncompressed (GMPCPP) dimers in the microtubule lattice.
View Article and Find Full Text PDFNat Geosci
January 2020
Laboratory of Hydraulics, Hydrology and Glaciology (VAW), ETH Zurich, Zurich, Switzerland.
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