Deep6: Classification of Metatranscriptomic Sequences into Cellular Empires and Viral Realms Using Deep Learning Models.

Microbiol Resour Announc

Department of Earth, Ocean, and Atmospheric Sciences, The University of British Columbia, Vancouver, British Columbia, Canada.

Published: February 2023

Deep6 is a deep learning model that classifies metatranscriptomic sequences as short as 250 nucleotides into prokaryotes, eukaryotes, or one of the four viral realms, using a reference-independent and alignment-free approach. Average accuracies range from 0.87 to 0.97, depending on sequence length.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9933670PMC
http://dx.doi.org/10.1128/mra.01079-22DOI Listing

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