[Spatial and Temporal Heterogeneity and Ecological Health Evaluation of Diatom Community Based on eDNA].

Huan Jing Ke Xue

State Key Laboratory of Pollution Control & Resource Reuse, School of Environment, Nanjing University, Nanjing 210023, China.

Published: January 2023

In recent years, environmental DNA (eDNA) has been widely used in aquatic biodiversity monitoring, and how to establish a river ecological health assessment method based on eDNA has become a hot topic. This study was intended to develop a molecular diatom index based on eDNA to indicate the ecological health status of rivers under the influence of human activities. Firstly, the diatom community composition and structural changes in the Shaying River basin in spring and autumn were monitored through eDNA, and the driving environmental factors of the diatom community were diagnosed. Further, four strategies (OTU-taxonomy, OTU-free, ASV-taxonomy, and ASV-free) based on eDNA metabarcoding data were compared, and a molecular diatom index suitable for ecological health assessment in the Shaying River basin was constructed. The results showed that: ① there were seasonal differences in diatom community structure, and , and other groups were the main factors to distinguish the seasonal differences. ② Mn, Fe, and TN were the main environmental factors affecting diatom community structure in spring, whereas COD and Cu were the main environmental factors affecting diatom community structure in autumn. ③ Among the four strategies, the diatom index calculated based on OTU-free data better reflected the environmental gradient change; the diatom index showed that the ecological health status of the Shaying River Basin was better in autumn than that in spring in time and better in the upstream than that in the downstream in space. In conclusion, this study monitored diatom community in Shaying River in spring and autumn through eDNA and constructed the molecular diatom index in the Shaying River basin, which promoted the application of eDNA to evaluate river ecological health.

Download full-text PDF

Source
http://dx.doi.org/10.13227/j.hjkx.202204019DOI Listing

Publication Analysis

Top Keywords

diatom community
28
ecological health
24
shaying river
20
river basin
16
diatom
12
based edna
12
molecular diatom
12
environmental factors
12
factors diatom
12
community structure
12

Similar Publications

Unlabelled: iKaluk, Inuttitut for Arctic charr (), holds significant commercial and cultural value for Inuit communities throughout Nunatsiavut. Studies evaluating iKaluk habitat associations in freshwater are plentiful; however, there is limited information on the ecological makeup and sediment characteristics of anadromous charr habitats in marine environments. This study investigated the benthic associations of Arctic charr during their marine residency period in Nain, Nunatsiavut, using underwater videos, harvester-identified fishing locations, and acoustic telemetry.

View Article and Find Full Text PDF

Co-occurrence patterns between Chlorophyta and nucleocytoplasmic large DNA virus in coastal ecosystem, South Korea.

Mar Environ Res

January 2025

Library of Marine Samples, Korea Institute of Ocean Science & Technology, Geoje, 53201, Republic of Korea; Department of Ocean Science, University of Science & Technology, Daejeon, 34113, Republic of Korea. Electronic address:

Nucleocytoplasmic large DNA viruses (NCLDVs) are known to infect phytoplankton and play a significant role in regulating their population dynamics. In this study, we aimed to investigate the co-occurrence patterns between phytoplankton and NCLDVs in the southern coastal ecosystem of South Korea. We collected seawater every month from March 2018 to December 2020 and analyzed the samples using Cytochrome c Oxidase subunit I metabarcoding and metagenomic analyses.

View Article and Find Full Text PDF

Photonic-based methods are crucial in biology and medicine due to their non-invasive nature, allowing remote measurements without affecting biological specimens. The study of diatoms using advanced photonic methods remains a relatively underexplored area, presenting significant opportunities for pioneering discoveries. This research provides a comprehensive analysis of marine diatoms, specifically Nitzschia sp.

View Article and Find Full Text PDF

Marine heatwaves (MHWs) caused by multiple phenomena with days to months duration are increasingly common disturbances in ocean ecosystems. We investigated the impacts of MHWs on pelagic communities using spatially resolved time-series of multiple trophic levels from the Southern California Current Ecosystem. Indices of phytoplankton biomass mostly declined during MHWs because of reduced nutrient supply (excepting Prochlorococcus) and were generally more sensitive to marine heatwave intensity than duration.

View Article and Find Full Text PDF

Microbial community assembly and co-occurrence patterns in Sanmen bay: A comparative analysis before and after nuclear power plant operation.

Sci Total Environ

December 2024

School of Marine Sciences, Ningbo University, Ningbo, 315211, China; State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Plant Virology, Ningbo University, Ningbo 315211, China; Key Laboratory of Applied Marine Biotechnology of Department of Education, Ningbo University, Ningbo 315211, China. Electronic address:

The limited availability of historical data has resulted in the ongoing debate regarding the short-term effects of thermal discharge from nuclear power plants (NPPs) on microbial communities, including both prokaryotes and microeukaryotes. This study focused on the co-occurrence patterns, assembly processes, and community functions in the eutrophic coastal waters of Sanmen Bay (SMB) before and after NPP operation. Gammaproteobacteria and Alphaproteobacteria were the dominant prokaryotic taxa, while Dinoflagellates consistently maintained their prevalence in SMB.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!