Long-read genome sequence data of pomegranate bacterial blight pathogen pv. 119.

Data Brief

Department of Plant Science, School of Biological Sciences, Central University of Kerala, Tejaswini Hills, Periye, Kasaragod 671320 Kerala, India.

Published: February 2023

Bacterial blight of pomegranate caused by pv. is a major constraint on pomegranate production in India. Multiple incidences of 60-80% yield losses have been reported from major growing areas. The molecular mechanism of pomegranate susceptibility to this disease is yet to be unraveled. A complete genome sequence is required to identify the pathogen's virulence factors. The available genomes of the pathogen are not complete. We have used the PacBio platform to obtain long reads and assembled the 119 genome and it consists of 15 contigs with an N50 value of 1.65 Mb. The assembled genome is 5.4 Mb in size; further, our annotation analysis yielded 5088 genes, 58 RNAs, and 7 Transcription activator-like effectors  (TALEs). The assembled genome is suitable for identifying the virulence factors of this pathogen. The data presented here will be helpful to the scientific community for various comparative genome analyses and to decipher the mode and factors of pathogenesis.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9823112PMC
http://dx.doi.org/10.1016/j.dib.2022.108849DOI Listing

Publication Analysis

Top Keywords

genome sequence
8
bacterial blight
8
virulence factors
8
assembled genome
8
genome
5
long-read genome
4
sequence data
4
pomegranate
4
data pomegranate
4
pomegranate bacterial
4

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!