The complete chloroplast genome of Diels (Zingiberaceae).

Mitochondrial DNA B Resour

College of Landscape Architecture and Life Science, Chongqing University of Arts and Sciences, Yongchuan, Chongqing, China.

Published: January 2023

The chloroplast genome of Diels was sequenced using the MGI paired-end sequencing method and assembled. The chloroplast genome was 163,711 bp in length, containing a large single-copy (LSC) region of 88,205 bp, a small single-copy (SSC) region of 15,750 bp, and two inverted repeat (IR) regions of 29,752 bp. The overall GC content was 36.1%, whereas the corresponding value in the IR regions was 41.1%, which was higher than that in the LSC region (33.8%) and SSC region (29.6%). A total of 136 complete genes were annotated in the chloroplast genome of , including 87 protein-coding genes (79 protein-coding gene species), 40 tRNA genes (29 tRNA species), and 8 rRNA genes (4 rRNA species). A phylogenetic tree was constructed using the maximum likelihood (ML) method, and the results showed that the phylogeny of was well resolved with high support values, and was sister to . The assembly and sequence analysis of the chloroplast genome can provide a basis for developing high-resolution genetic makers.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9815242PMC
http://dx.doi.org/10.1080/23802359.2022.2160218DOI Listing

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