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An analysis pipeline to compare explorative locomotion across fish species. | LitMetric

An analysis pipeline to compare explorative locomotion across fish species.

STAR Protoc

Sorbonne Université, INSERM, CNRS, Institut de la Vision, 75012 Paris, France; Institut Curie, PSL Research University, INSERM U934, CNRS UMR3215, Paris, France. Electronic address:

Published: December 2022

Recently, we introduced a powerful approach that leverages differences in swimming behaviors of two closely related fish species to identify previously unreported locomotion-related neuronal correlates. Here, we present this analysis approach applicable for any species of fish to compare their short and long timescale swimming kinematics. We describe steps for data collection and cleaning, followed by the calculation of short timescale kinematics using half tail beats and the analysis of long timescale kinematics using mean square displacement and heading decorrelation. For complete details on the use and execution of this protocol, please refer to Rajan et al. (2022)..

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9679675PMC
http://dx.doi.org/10.1016/j.xpro.2022.101850DOI Listing

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