Diffusion Monte Carlo (DMC) is one of the most accurate techniques available for calculating the electronic properties of molecules and materials, yet it often remains a challenge to economically compute forces using this technique. As a result, ab initio molecular dynamics simulations and geometry optimizations that employ Diffusion Monte Carlo forces are often out of reach. One potential approach for accelerating the computation of "DMC forces" is to machine learn these forces from DMC energy calculations. In this work, we employ Behler-Parrinello Neural Networks to learn DMC forces from DMC energy calculations for geometry optimization and molecular dynamics simulations of small molecules. We illustrate the unique challenges that stem from learning forces without explicit force data and from noisy energy data by making rigorous comparisons of potential energy surface, dynamics, and optimization predictions among ab initio density functional theory (DFT) simulations and machine-learning models trained on DFT energies with forces, DFT energies without forces, and DMC energies without forces. We show for three small molecules─C, HO, and CHCl─that machine-learned DMC dynamics can reproduce average bond lengths and angles within a few percent of known experimental results at one hundredth of the typical cost. Our work describes a much-needed means of performing dynamics simulations on high-accuracy, DMC PESs and for generating DMC-quality molecular geometries given current algorithmic constraints.
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http://dx.doi.org/10.1021/acs.jpca.2c05904 | DOI Listing |
Int J Heat Mass Transf
March 2024
Department of Mechanical and Aerospace Engineering, University of California, Los Angeles, CA 90095, United States of America.
In classical theory, heat conduction in solids is regarded as a diffusion process driven by a temperature gradient, whereas fluid transport is understood as convection process involving the bulk motion of the liquid or gas. In the framework of theory, which is directly built upon quantum mechanics without relying on measured parameters or phenomenological models, we observed and investigated the fluid-like convective transport of energy carriers in solid heat conduction. Thermal transport, carried by phonons, is simulated in graphite by solving the Boltzmann transport equation using a Monte Carlo algorithm.
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December 2024
Shandong Institute of Geological Survey, Jinan, 250013, China.
Fluoride (F) is the most important inorganic pollutant in groundwater that affects human health, and analyzing the causes of high-fluoride groundwater is a prerequisite for protecting the health of residents. To comprehensively understand the enrichment characteristics of groundwater in the high-fluoride areas, this study systematically investigated the concentrations of fluoride in Gaomi City, a typical study area in the Jiaolai Plain and explored the spatiotemporal distribution patterns, enrichment mechanisms, and the probabilistic health risk associated with F. The results indicate that there is serious fluorine pollution in groundwater, which is mainly concentrated in the alluvial plain in the north and affected by topographical and aquifer characteristics.
View Article and Find Full Text PDFJ Chem Eng Data
December 2024
Institute for Materials and Processes, School of Engineering, The University of Edinburgh, Edinburgh EH9 3FB, Scotland, U.K.
A comprehensive quantitative grasp of methane (CH), nitrogen (N), and their mixture's adsorption and diffusion in MIL-101(Cr) is crucial for wide and important applications, e.g., natural gas upgrading and coal-mine methane capturing.
View Article and Find Full Text PDFPhys Rev E
November 2024
Sonny Astani Department of Civil and Environmental Engineering, University of Southern California, Los Angeles, California 90089-2531, USA.
Statistics of diffusion, modeled by random walks, such as the mean number of distinct sites visited S(t) at time t, the mean probability P_{0}(t) of being at the origin of the walk, and the mean-squared displacements 〈R^{2}(t)〉 of the random walkers have been studied extensively in the past in both regular lattices and such disordered media as percolation clusters and other fractal structures, and universal power laws for such quantities have been derived. S(t) provides insight into reaction properties of geological formations, while P_{0}(t) is directly linked with the problem of back diffusion in remediation of groundwater aquifers. In all such studies, it was assumed that the conductances of the bonds that connect nearest-neighbor sites of the lattices are equal.
View Article and Find Full Text PDFPhys Rev E
November 2024
Laboratório de Física Teórica e Computacional, Departamento de Física, Universidade Federal de Pernambuco, Recife-PE 50670-901, Brazil.
Space-fractional diffusion equations find widespread application in nature. They govern the anomalous dynamics of many stochastic processes, generalizing the standard diffusion equation to superdiffusive behavior. Strikingly, the solution of space-fractional diffusion equations on bounded domains is still an open problem.
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