The stretching dynamics and dynamical behaviors of individual branched ring polymer (BRP), a coarse-grained model for some types of the starch, in steady shear flow are studied by using a hybrid mesoscale simulation approach that combines multiparticle collision dynamics with standard molecular dynamics. By analyzing the stretched configuration of BRPs, we find the polymer size increases nonmonotonically with increasing branch length. Meanwhile, the decrease of the alignment angle of the stretched configuration of BRPs follows a universal power law during the first downward phase as the shear rate increases. Constructing the three-dimensional surface of the polymer's ring backbone and tracing the temporal fluctuations of the surface's normal vector along the simulation trajectory, the tumbling and tank-treading motion are clearly reflected by periodic and non-periodic changes of the normal vector. Interestingly, these temporal changes are much more regular than that of the gyration tensor. Thus, a novel cross-correlation function, which is the correlation between fluctuations of the normal vector along the flow direction and the velocity-gradient direction, is proposed to analyze the tumbling motion that usually coexists with the tank-treading motion. This function can naturally address the fails of traditional method that analyzing the tumbling motion by determining the correlation of temporal fluctuations of the gyration tensor G. By analyzing the dynamical behaviors of BRPs, diverse dependences of the tumbling frequency ω and tank-treading frequency ω on the shear rate γ̇ are observed at a wide range of shear rates and polymer sizes. Furthermore, our simulations also reveal that the tank-treading motion is more stable than the tumbling motion for small-branch-size BRPs but the tumbling motion is more stable than the tank-treading motion for large-branch-size BRPs.
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http://dx.doi.org/10.1016/j.ijbiomac.2022.12.100 | DOI Listing |
Langmuir
December 2024
Department of Biomedical and Chemical Engineering and the Bioinspired Institute, Syracuse University, Syracuse, New York 13244, United States.
Copolymer nanovesicles are used extensively in chemical processes and biomedical applications in which they are subjected to dynamic flow environments. Flow-induced vesicle deformation, fragmentation, and reorganization modify the energetic (e.g.
View Article and Find Full Text PDFJ Chem Phys
November 2024
Department of Bioengineering, Imperial College London, South Kensington Campus, London SW7 2AZ, United Kingdom and Department of Mathematics, Imperial College London, South Kensington Campus, London SW7 2AZ, United Kingdom.
We investigate a ring polymer under the influence of chiral active Brownian forces in two dimensions using coarse-grained computer simulations. We observe a non-monotonic behavior of the radius of gyration of an active Brownian ring as a function of active force. However, the shrinkage of the ring in the intermediate strength of active forces becomes more pronounced in the presence of chiral active forces, and the shrinkage is monotonic at a given activity level as a function of the angular frequency controlling the direction of the active force.
View Article and Find Full Text PDFJ Chem Phys
August 2024
Department of Physics, Indian Institute of Science Education and Research, Bhopal, Bhopal 462 066, Madhya Pradesh, India.
We theoretically study the conformational and dynamical properties of semiflexible active polar ring polymers under linear shear flow. A ring is described as a continuous semiflexible Gaussian polymer with a tangential active force of a constant density along its contour. The linear but non-Hermitian equation of motion is solved using an eigenfunction expansion, which yields activity-independent, but shear-rate-dependent, relaxation times and activity-dependent frequencies.
View Article and Find Full Text PDFChaos
June 2024
Laboratory of Mathematical Analysis and Application, Faculty of Sciences Dhar Al Mahraz, Sidi Mohamed Ben Abdellah University, B.P. 1796, Fez 30000, Morocco.
The solution of fractional differential equations is a significant focus of current research, given their prevalence in various fields of application. This paper introduces an innovative exploration of vesicle dynamics using Jumarie's modified Riemann-Liouville fractional derivative within a five-dimensional fractional rigid sphere model. The study reveals an exact solution through the Mittag-Leffler function, providing a deep understanding of intricate vesicle dynamics, including alternative motions, such as tank-treading with over-damped and under-damped vesicle oscillations, respectively, TT-OD and TT-UD.
View Article and Find Full Text PDFChaos
March 2024
LAMFA, CNRS UMR 7352, Department de Mathematics, Picardie Jules Verne University, Amiens 80039, France.
Using a small deformation approach, a fractional ordinary differential system is proposed to investigate the motion and deformation of a vesicle in shear flow. Closed analytical expressions of the orientation angle and the ellipticity of the vesicle contour (shape deformation) are provided. Three different motions are identified, the classical tank-treading state, and two new types of motions, namely, the over-damped tank-treading mode, in which the vesicle's orientation angle ψ and its shape deformation R tend more slowly toward equilibrium, and the under-damped tank-treading mode, in which ψ oscillates all the time along the flow direction with decreasing amplitude, while R starts making a breathing motion and then tends to an attractive amplitude.
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