Concordant Mode Approach for Molecular Vibrations.

J Am Chem Soc

Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602 United States.

Published: December 2022

The Concordant Mode Approach (CMA) is advanced as a novel hierarchy for increasing the system size and level of theory feasible for quantum chemical computations of harmonic vibrational frequencies. The key concept behind CMA is that transferrable, internal-coordinate normal modes computed at an appropriate lower level of theory (B) comprise a superb basis for converging to vibrational frequencies given by a higher level of theory (A). Accordingly, high-level harmonic frequencies can be evaluated via CMA from a collection of single-point energies that essentially scales linearly in the number of atoms, providing nearly order-of-magnitude CPU time speedups. The accuracy of CMA methods was established by comprehensive tests on over 120 molecules for target Level A = CCSD(T)/cc-pVTZ with auxiliary Level B choices of both CCSD(T)/cc-pVDZ and B3LYP/6-31G(2). Remarkably, the frequency residuals given by the diagonal CMA-0A(nc) scheme exhibit mean absolute deviations (MADs) of only 0.2 cm and standard deviations less than 0.5 cm; the corresponding zero-point vibrational energies (ZPVEs) have negligible errors in the vicinity of 0.3 cm.

Download full-text PDF

Source
http://dx.doi.org/10.1021/jacs.2c11158DOI Listing

Publication Analysis

Top Keywords

level theory
12
concordant mode
8
mode approach
8
vibrational frequencies
8
level
5
approach molecular
4
molecular vibrations
4
vibrations concordant
4
cma
4
approach cma
4

Similar Publications

In vitro metabolism of seven arolyl-derived fentanyl-type new psychoactive substances.

Arch Toxicol

January 2025

School of Chemistry and Chemical Engineering, Guangxi University, Nanning, Guangxi, 530004, People's Republic of China.

Over the past decade, fentanyl-type new psychoactive substances (F-NPS) have emerged as the most representative synthetic opioids in third-generation drugs. These substances are characterized by their "low" fatal dose and parent drug levels in biological matrices, "fast" rates of derivatization and metabolism, and "many" derivatization sites and analogs. The low levels of parent fentanyl NPS in biological matrices complicate their detection, necessitating the use of characteristic metabolites as biomarkers for forensic analysis.

View Article and Find Full Text PDF

Climate change, driven by carbon emissions, has emerged as a pressing global ecological and environmental challenge. Here, we leverage the panel data of five provinces and above prefecture-level cities in the middle and lower reaches of the Yellow River Basin to estimate the agricultural carbon emissions (CEs), carbon sinks (CSs), carbon compensation rate (CCR), and carbon compensation potential (CCP) from 2001 to 2022 and investigate the spatiotemporal evolution characteristics for this region. We propose an improved GLM-stacking ensemble learning method for CE prediction with limited sample data.

View Article and Find Full Text PDF

How does dopamine convert into norepinephrine? Insights on the key step of the reaction.

J Mol Model

January 2025

Laboratorio de Química Teórica Computacional (QTC), Facultad de Química y de Farmacia, Pontificia Universidad Católica de Chile, Avenida Vicuña Mackenna 4860, 7820436, Santiago de Chile, Chile.

Context: Dopamine -monooxygenase (D M) is an essential enzyme in the organism that regioselectively converts dopamine into R-norepinephrine, the key step of the reaction, studied in this paper, is a hydrogen atom transfer (HAT) from dopamine to a superoxo complex on D M, forming a hydroperoxo intermediate and dopamine radical. It was found that the formation of a hydrogen bond between dopamine and the D M catalyst strengthens the substrate-enzyme interaction and facilitates the HAT which takes place selectively to give the desired enantiomeric form of the product. Six reactions leading to the hydroperoxo intermediate were analyzed in detail using theoretical and computational tools in order to identify the most probable reaction mechanism.

View Article and Find Full Text PDF

Background: The accumulation of misfolded tau proteins, an Alzheimer's disease (AD) hallmark, starts decades before the emergence of cognitive decline and clinical diagnosis. Autopsy studies support a predictable progression of tau pathology through large-scale systems. However, less is known about the specific progression patterns.

View Article and Find Full Text PDF

Background: The Montreal Cognitive Assessment (MoCA) stands as a prominent cognitive impairment screening tool, finding widespread use globally and existing in official versions across 14 languages, including Spanish. Despite this, the challenges emerge due to the extensive variations within the Spanish language, which is not only the fourth most spoken language worldwide but also possesses significant geographic diversity, particularly evident in regions like Peru. Here, the intersection of regional nuances, low educational backgrounds, and culturally distinct tasks complicates the application of a standard MoCA version.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!