We report the development of a python-based auxiliary-field quantum Monte Carlo (AFQMC) program, ipie, with preliminary timing benchmarks and new AFQMC results on the isomerization of [CuO]. We demonstrate how implementations for both central and graphical processing units (CPUs and GPUs) are achieved in ipie. We show an interface of ipie with PySCF as well as a straightforward template for adding new estimators to ipie. Our timing benchmarks against other C++ codes, QMCPACK and Dice, suggest that ipie is faster or similarly performing for all chemical systems considered on both CPUs and GPUs. Our results on [CuO] using selected configuration interaction trials show that it is possible to converge the ph-AFQMC isomerization energy between bis(μ-oxo) and μ-η:η peroxo configurations to the exact known results for small basis sets with 10-10 determinants. We also report the isomerization energy with a quadruple-zeta basis set with an estimated error less than a kcal/mol, which involved 52 electrons and 290 orbitals with 10 determinants in the trial wave function. These results highlight the utility of ph-AFQMC and ipie for systems with modest strong correlation and large-scale dynamic correlation.
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Vis Comput Ind Biomed Art
January 2025
Faculty of Sciences, Sfax, Tunisia.
The vision transformer (ViT) architecture, with its attention mechanism based on multi-head attention layers, has been widely adopted in various computer-aided diagnosis tasks due to its effectiveness in processing medical image information. ViTs are notably recognized for their complex architecture, which requires high-performance GPUs or CPUs for efficient model training and deployment in real-world medical diagnostic devices. This renders them more intricate than convolutional neural networks (CNNs).
View Article and Find Full Text PDFBiomed Opt Express
December 2024
Department of Ophthalmology, Stanford University, Palo Alto, CA 94303, USA.
We explore camera-based pupil tracking using high-level programming in computing platforms with end-user discrete and integrated central processing units (CPUs) and graphics processing units (GPUs), seeking low calculation latencies previously achieved with specialized hardware and programming (Kowalski et al., [Biomed. Opt.
View Article and Find Full Text PDFMol Inform
January 2025
Departamento de Produtos Farmacêuticos, Faculdade de Farmácia, Universidade Federal de Minas Gerais (UFMG), Belo Horizonte, MG, 31270-901, Brazil.
Virtual screening (VS) in drug design employs computational methodologies to systematically rank molecules from a virtual compound library based on predicted features related to their biological activities or chemical properties. The recent expansion in commercially accessible compound libraries and the advancements in artificial intelligence (AI) and computational power - including enhanced central processing units (CPUs), graphics processing units (GPUs), high-performance computing (HPC), and cloud computing - have significantly expanded our capacity to screen libraries containing over 10 molecules. Herein, we review the concept of ultra-large virtual screening (ULVS), focusing on the various algorithms and methodologies employed for virtual screening at this scale.
View Article and Find Full Text PDFFront Big Data
October 2024
Computational Science and AI Directorate, Fermi National Accelerator Laboratory, Batavia, IL, United States.
Traditionally, high energy physics (HEP) experiments have relied on x86 CPUs for the majority of their significant computing needs. As the field looks ahead to the next generation of experiments such as DUNE and the High-Luminosity LHC, the computing demands are expected to increase dramatically. To cope with this increase, it will be necessary to take advantage of all available computing resources, including GPUs from different vendors.
View Article and Find Full Text PDFJ Chem Phys
October 2024
Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, USA.
ipie is a Python-based auxiliary-field quantum Monte Carlo (AFQMC) package that has undergone substantial improvements since its initial release [Malone et al., J. Chem.
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