Background And Objective: For esophageal squamous cell carcinoma, radiotherapy is one of the primary treatments. During the planning before radiotherapy, the intractable task is to precisely delineate the esophageal gross tumor volume (GTV) on medical images. In current clinical practice, the manual delineation suffers from high intra- and inter-rater variability, while also exhausting the oncologists on a treadmill. There is an urgent demand for effective computer-aided automatic segmentation methods. To this end, we designed a novel deep network, dubbed as GloD-LoATUNet.
Methods: GloD-LoATUNet follows the effective U-shape structure. On the contractile path, the global deformable dense attention transformer (GloDAT), local attention transformer (LoAT), and convolution blocks are integrated to model long-range dependencies and localized information. On the center bridge and the expanding path, convolution blocks are adopted to upsample the extracted representations for pixel-wise semantic prediction. Between the peer-to-peer counterparts, enhanced skip connections are built to compensate for the lost spatial information and dependencies. By exploiting complementary strengths of the GloDAT, LoAT, and convolution, GloD-LoATUNet has remarkable representation learning capabilities, performing well in the prediction of the small and variable esophageal GTV.
Results: The proposed approach was validated in the clinical positron emission tomography/computed tomography (PET/CT) cohort. For 4 different data partitions, we report the Dice similarity coefficient (DSC), Hausdorff distance (HD), and Mean surface distance (MSD) as: 0.83±0.13, 4.88±9.16 mm, and 1.40±4.11 mm; 0.84±0.12, 6.89±12.04 mm, and 1.18±3.02 mm; 0.84±0.13, 3.89±7.64 mm, and 1.28±3.68 mm; 0.86±0.09, 3.71±4.79 mm, and 0.90±0.37 mm; respectively. The predicted contours present a desirable consistency with the ground truth.
Conclusions: The inspiring results confirm the accuracy and generalizability of the proposed model, demonstrating the potential for automatic segmentation of esophageal GTV in clinical practice.
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http://dx.doi.org/10.1016/j.cmpb.2022.107266 | DOI Listing |
Heliyon
December 2024
Human and Animal Physiology, Department Animal Sciences, Wageningen University, De Elst 1, 6708WD, Wageningen, the Netherlands.
Label-free imaging is routinely used during cell culture because of its minimal interference with intracellular biology and capability of observing cells over time. However, label-free image analysis is challenging due to the low contrast between foreground signals and background. So far various deep learning tools have been developed for label-free image analysis and their performance depends on the quality of training data.
View Article and Find Full Text PDFFront Physiol
December 2024
Department of Radiology, Yiyang Central Hospital, Yiyang, China.
Objectives: To evaluate the effectiveness of an MRI radiomics stacking ensemble learning model, which combines T2-weighted imaging (T2WI) and contrast-enhanced T1-weighted imaging (CE-T1WI) with deep learning-based automatic segmentation, for preoperative prediction of the prognosis of high-intensity focused ultrasound (HIFU) ablation of uterine fibroids.
Methods: This retrospective study collected data from 360 patients with uterine fibroids who underwent HIFU treatment. The dataset was sourced from Center A (training set: N = 240; internal test set: N = 60) and Center B (external test set: N = 60).
Commun Med (Lond)
January 2025
Department of Dermatology, Graduate School of Medicine, Tohoku University, Sendai, Japan.
Background: Chronic kidney disease (CKD) causes progressive and irreversible damage to the kidneys. Renal biopsies are essential for diagnosing the etiology and prognosis of CKD, while accurate quantification of tubulo-interstitial injuries from whole slide images (WSIs) of renal biopsy specimens is challenging with visual inspection alone.
Methods: We develop a deep learning-based method named DLRS to quantify interstitial fibrosis and inflammatory cell infiltration as tubulo-interstitial injury scores, from WSIs of renal biopsy specimens.
Biomed Tech (Berl)
January 2025
Department of Computer Science, 72937 Centre for Machine Learning and Intelligence (CMLI), Avinashilingam Institute for Home Science and Higher Education for Women, Coimbatore, India.
Objectives: Diabetic retinopathy (DR) is associated with long-term diabetes and is a leading cause of blindness if it is not diagnosed early. The rapid growth of deep learning eases the clinicians' DR diagnosing procedure. It automatically extracts the features and performs the grading.
View Article and Find Full Text PDFBMC Neurol
January 2025
Department of Diagnostic Radiology, Kaohsiung Chang Gung Memorial Hospital and Chang Gung University College of Medicine, School of Medicine, College of Medicine, National Sun Yat-Sen University, No. 123 Ta-Pei Road, Niao-Sung Dist, Kaohsiung, 83305, Taiwan.
Background And Purpose: White matter hyperintensities in brain MRI are key indicators of various neurological conditions, and their accurate segmentation is essential for assessing disease progression. This study aims to evaluate the performance of a 3D convolutional neural network and a 3D Transformer-based model for white matter hyperintensities segmentation, focusing on their efficacy with limited datasets and similar computational resources.
Materials And Methods: We implemented a convolution-based model (3D ResNet-50 U-Net with spatial and channel squeeze & excitation) and a Transformer-based model (3D Swin Transformer with a convolutional stem).
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