The seed coat sculpture is one of the most important taxonomic distinguishing features. The objective of this study is to classify coat patterns of L. seeds into new groups using scanning electron microscopy unsupervised machine learning. Selected images of seed coat patterns from more than 100 species described in literature and data from our samples were classified into seven types of anticlinal (irregular curved, irregular curved to nearly straight, straight, S, U, U to Ω, and Ω) and five types of periclinal walls (granule, small verrucae, large verrucae, marginal verrucae, and verrucate verrucae). We used five unsupervised machine learning approaches: K-means, K-means++, Minibatch K-means, Spectral, and Birch. The elbow and silhouette approaches were then used to determine the number of clusters required. Thereafter, we compared human- and machine-based results and proposed a new clustering. We then separated the data into six target clusters: SI, SS, SM, NS, PS, and PD. The proposed strongly identical grouping is distinct from the other groups in that the results are exactly the same, but PD is unrelated to the others. Thus, unsupervised machine learning has been shown to support the development of new groups in the seed coat pattern.
Download full-text PDF |
Source |
---|---|
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9692843 | PMC |
http://dx.doi.org/10.3390/plants11223097 | DOI Listing |
J Fungi (Basel)
December 2024
Department of Agriculture, Agribusiness, and Environmental Sciences, Texas A&M University, 700 University Blvd, MSC 228, Kingsville, TX 78363, USA.
Aflatoxin B1 (AFB1) contamination (AC) increases as the severity of drought stress increases in peanuts. Identifying drought-tolerant (DT) genotypes with resistance to colonization and/or infection may aid in developing peanuts resistant to aflatoxin contamination in the semi-arid tropics. The goal of this study is to identify DT genotypes with seed coat biochemical resistance to infestation and aflatoxin contamination.
View Article and Find Full Text PDFFront Plant Sci
December 2024
International Agriculture Research Institute, Yunnan Academy of Agricultural Sciences, Kunming, China.
This research presents an innovative genetic transformation protocol for marigolds ( L.), a species of great significance in floriculture, impacting both yield and quality. The study introduces seed priming technology as a novel approach and evaluates its effect on the germination rate.
View Article and Find Full Text PDFPlant Reprod
December 2024
Max Planck Institute of Molecular Plant Physiology, Potsdam Science Park, Am Mühlenberg 1, 14476, Potsdam, Germany.
This review covers the latest developments on the regulation of early seed development by phytohormones. The development of seeds in flowering plants starts with the fertilization of the maternal gametes by two paternal sperm cells. This leads to the formation of two products, embryo and endosperm, which are surrounded by a tissue of maternal sporophytic origin, called the seed coat.
View Article and Find Full Text PDFShrub encroachment can alter the structure and function of grassland ecosystems, leading to their degradation. Therefore, population regeneration dynamics after shrub encroachment on the influence of grassland should not be ignored. , as a pioneer species, has significantly encroached with large areas on the Qinghai-Tibetan Plateau (QTP) due to climate change and over-grazing.
View Article and Find Full Text PDFPlant Sci
December 2024
Department of Life Science, Sogang University, Seoul 04107, Republic of Korea. Electronic address:
Suberin is an extracellular hydrophobic polymer deposited in seed coats that acts as a barrier to regulate the movement of ions, water, and gases, and protects seeds against pathogens. However, the molecular mechanisms underlying suberin deposition in the seed coat remain unknown. In this study, the in planta role of ATP-binding cassette G23 (ABCG23) was investigated in the Arabidopsis seed coat.
View Article and Find Full Text PDFEnter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!