Discordance between different genomic regions, often identified through multilocus sequencing of selected markers, presents particular difficulties in identifying historical processes which drive species diversity and boundaries. Mechanisms causing discordance, such as incomplete lineage sorting or introgression due to interspecific hybridization, are better identified based on population-level genomic datasets. In the toads of the Rhinella granulosa species group, patterns of mito-nuclear discordance and potential hybridization have been reported by several studies. However, these patterns were proposed based on few loci, such that alternative mechanisms behind gene-tree heterogeneity cannot be ruled out. Using genome-wide ddRADseq loci from a subset of species within this clade, we found only partial concordance between currently recognized species-level taxon boundaries and patterns of genetic structure. While most taxa within the R. granulosa group correspond to clades, genetic clustering analyses sometimes grouped distinct taxonomic units into a single cluster. Moreover, levels of admixture between inferred clusters were limited and restricted to a single taxon pair which is best explained by incomplete lineage sorting as opposed to introgressive hybridization, according to D-statistics results. These findings contradict previous assertions of widespread cryptic diversity and gene flow within the R. granulosa clade. Lastly, our analyses suggest that diversification events within the Rhinella granulosa group mostly dated back to the early Pliocene, being generally younger than species divergences in other closely related clades that present high levels of cross-species gene flow. This finding uniquely contradicts common assertions that this young clade of toads exhibits interspecific hybridization.

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41437-022-00571-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9814136PMC

Publication Analysis

Top Keywords

rhinella granulosa
12
assertions widespread
8
introgressive hybridization
8
granulosa species
8
species group
8
incomplete lineage
8
lineage sorting
8
interspecific hybridization
8
granulosa group
8
gene flow
8

Similar Publications

Comparative molecular and conventional cytogenetic analyses of three species of Rhinella (Anura; Bufonidae).

PLoS One

August 2024

Faculdade de Ciências Naturais, Instituto de Ciências Exatas Naturais e Exatas, Universidade Federal do Pará, Belém, Pará, Brazil.

The genus Rhinella corresponds to a group of anurans characterized by numerous taxonomic and systemic challenges, leading to their organization into species complexes. Cytogenetic data for this genus thus far are limited to the diploid number and chromosome morphology, which remain highly conserved among the species. In this study, we analyse the karyotypes of three species of the genus Rhinella (Rhinella granulosa, Rhinella margaritifera, and Rhinella marina) using both classical (conventional staining and C-banding) and molecular (FISH-fluorescence in situ hybridization with 18S rDNA, telomeric sequences, and microsatellite probes) cytogenetic approaches.

View Article and Find Full Text PDF

Artificial intelligence enables unified analysis of historical and landscape influences on genetic diversity.

Mol Phylogenet Evol

September 2024

Museum of Biological Diversity & Department of Evolution, Ecology and Organismal Biology, The Ohio State University, 1315 Kinnear Rd., Columbus OH 43212, USA. Electronic address:

While genetic variation in any species is potentially shaped by a range of processes, phylogeography and landscape genetics are largely concerned with inferring how environmental conditions and landscape features impact neutral intraspecific diversity. However, even as both disciplines have come to utilize SNP data over the last decades, analytical approaches have remained for the most part focused on either broad-scale inferences of historical processes (phylogeography) or on more localized inferences about environmental and/or landscape features (landscape genetics). Here we demonstrate that an artificial intelligence model-based analytical framework can consider both deeper historical factors and landscape-level processes in an integrated analysis.

View Article and Find Full Text PDF

Discordance between different genomic regions, often identified through multilocus sequencing of selected markers, presents particular difficulties in identifying historical processes which drive species diversity and boundaries. Mechanisms causing discordance, such as incomplete lineage sorting or introgression due to interspecific hybridization, are better identified based on population-level genomic datasets. In the toads of the Rhinella granulosa species group, patterns of mito-nuclear discordance and potential hybridization have been reported by several studies.

View Article and Find Full Text PDF

Endoparasite community structure of an anuran assemblage in the Caatinga, Northeastern Neotropical Region.

J Helminthol

October 2022

Centro de Ciências de Chapadinha, Universidade Federal do Maranhão, Rodovia MA 230, Km 04, S/N, Boa Vista, Chapadinha CEP 65500-000, MA, Brazil.

Amphibians are a widespread Chordata taxon and are important for maintaining the balance of both terrestrial and aquatic ecosystems. Brazil has a rich amphibian fauna; however, little is known about the role of their ecology and phylogenetic relationships during the assembly processes of associated endoparasite communities. Herein, we describe an endoparasite community in an anuran assemblage in the Caatinga, a unique biome of dry forests in north-eastern Brazil.

View Article and Find Full Text PDF

Elevated corticosterone levels are associated with increased immunocompetence in male toads, both when calling and under experimental conditions.

Horm Behav

January 2022

Departamento de Fisiologia, Instituto de Biociências, Universidade de São Paulo, Rua do Matão, trav. 14, n° 321, 05508-900 São Paulo, SP, Brazil.

Circulating androgens can influence immune responses and sexual traits in male vertebrates. However, in the last 20 years, glucocorticoids have also been implicated as a possible source of variation in male sexual traits and immunocompetence. In this context, we studied the relations between male vocal mating display, immunity, androgens, and glucocorticoids in the explosive breeding toad Rhinella granulosa.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!