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Molecular dynamics simulations for the study of chromatin biology. | LitMetric

Molecular dynamics simulations for the study of chromatin biology.

Curr Opin Struct Biol

Department of Biophysics, Graduate School of Science, Kyoto University, Japan.

Published: December 2022

AI Article Synopsis

Article Abstract

The organization of Eukaryotic DNA into chromatin has profound implications for the processing of genetic information. In the past years, molecular dynamics (MD) simulations proved to be a powerful tool to investigate the mechanistic basis of chromatin biology. We review recent all-atom and coarse-grained MD studies revealing how the structure and dynamics of chromatin underlie its biological functions. We describe the latest method developments; the structural fluctuations of nucleosomes and the various factors affecting them; the organization of chromatin fibers, with particular emphasis on its liquid-like character; the interactions and dynamics of transcription factors on chromatin; and how chromatin organization is modulated by molecular motors acting on DNA.

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Source
http://dx.doi.org/10.1016/j.sbi.2022.102485DOI Listing

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