Accurate tissue segmentation in histopathological images is essential for promoting the development of precision pathology. However, the size of the digital pathological image is great, which needs to be tiled into small patches containing limited semantic information. To imitate the pathologist's diagnosis process and model the semantic relation of the whole slide image, We propose a semi-supervised pixel contrastive learning framework (SSPCL) which mainly includes an uncertainty-guided mutual dual consistency learning module (UMDC) and a cross image pixel-contrastive learning module (CIPC). The UMDC module enables efficient learning from unlabeled data through mutual dual-consistency and consensus-based uncertainty. The CIPC module aims at capturing the cross-patch semantic relationship by optimizing a contrastive loss between pixel embeddings. We also propose several novel domain-related sampling methods by utilizing the continuous spatial structure of adjacent image patches, which can avoid the problem of false sampling and improve the training efficiency. In this way, SSPCL significantly reduces the labeling cost on histopathological images and realizes the accurate quantitation of tissues. Extensive experiments on three tissue segmentation datasets demonstrate the effectiveness of SSPCL, which outperforms state-of-the-art up to 5.0% in mDice.
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http://dx.doi.org/10.1109/JBHI.2022.3216293 | DOI Listing |
PLoS Biol
January 2025
School of Biosciences and Bateson Centre, University of Sheffield, Western Bank, Sheffield, United Kingdom.
Heart development involves the complex structural remodelling of a linear heart tube into an asymmetrically looped and ballooned organ. Previous studies have associated regional expansion of extracellular matrix (ECM) space with tissue morphogenesis during development. We have developed morphoHeart, a 3D tissue segmentation and morphometry software with a user-friendly graphical interface (GUI) that delivers the first integrated 3D visualisation and multiparametric analysis of both heart and ECM morphology in live embryos.
View Article and Find Full Text PDFPhysiol Rep
February 2025
Motion and Exercise Science, University of Stuttgart, Stuttgart, Germany.
The maintenance of an appropriate ratio of body fat to muscle mass is essential for the preservation of health and performance, as excessive body fat is associated with an increased risk of various diseases. Accurate body composition assessment requires precise segmentation of structures. In this study we developed a novel automatic machine learning approach for volumetric segmentation and quantitative assessment of MRI volumes and investigated the efficacy of using a machine learning algorithm to assess muscle, subcutaneous adipose tissue (SAT), and bone volume of the thigh before and after a strength training.
View Article and Find Full Text PDFCureus
December 2024
Department of Urology, Indira Gandhi Institute of Medical Sciences, Patna, IND.
Background Currently, there is no data on the prevalence of urethral stricture illness in India. For short-segment bulbar urethral stricture, end-to-end anastomosis is the gold standard of care. The purpose of this study was to find where the direct vision internal urethrotomy (DVIU) exists in today's era.
View Article and Find Full Text PDFCureus
December 2024
Colorectal Surgery, Blackpool Teaching Hospitals, Blackpool, GBR.
Meckel's diverticulum (MD) is a common congenital anomaly of the gastrointestinal tract, present in approximately 2% of the population. While typically asymptomatic, MD can lead to complications such as obstruction and intussusception. Here, we present a case report of a man presenting with abdominal pain with an incidental finding of MD complicated by intussusception and our management approach.
View Article and Find Full Text PDFImaging-based spatial transcriptomics (ST) is evolving rapidly as a pivotal technology in studying the biology of tumors and their associated microenvironments. However, the strengths of the commercially available ST platforms in studying spatial biology have not been systematically evaluated using rigorously controlled experiments. In this study, we used serial 5-µm sections of formalin-fixed, paraffin-embedded surgically resected lung adenocarcinoma and pleural mesothelioma tumor samples in tissue microarrays to compare the performance of the single cell ST platforms CosMx, MERFISH, and Xenium (uni/multi-modal) platforms in reference to bulk RNA sequencing, multiplex immunofluorescence, GeoMx Digital Spatial Profiler, and hematoxylin and eosin staining data for the same samples.
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