Synchrotron microtomography image restoration via regularization representation and deep CNN prior.

Comput Methods Programs Biomed

School of Biomedical Engineering and Technology, Tianjin Medical University, Tianjin 300070, China. Electronic address:

Published: November 2022

Background And Objective: Synchrotron-based X-ray microtomography (S-µCT) is a promising imaging technique that plays an important role in modern medical science. S-µCT systems often cause various artifacts and noises in the reconstructed CT images, such as ring artifacts, quantum noise, and electronic noise. In most situations, such noise and artifacts occur simultaneously, which results in a deterioration in the image quality and affects subsequent research. Due to the complexity of the distribution of these mixed artifacts and noise, it is difficult to restore the corrupted images. To address this issue, we propose a novel algorithm to remove mixed artifacts and noise from S-µCT images simultaneously.

Methods: There are two important aspects of our method. Regarding ring artifacts, because of their specific structural characteristics, regularization-based methods are more suitable; thus, low-rank tensor decomposition and total variation are utilized to represent their directional and locally piecewise smoothness properties. Moreover, to determine the implicit prior of the random noise, a convolutional neural network (CNN) based method is used. The advantages of traditional regularization and the deep CNN are then combined and embedded in a plug-and-play framework. Hence, an efficient image restoration algorithm is proposed to address the problem of mixed artifacts and noise in S-µCT images.

Results: Our proposed method was assessed by utilizing simulations and real data experiments. The qualitative results showed that the proposed method could effectively remove ring artifacts as well as random noise. The quantitative results demonstrated that the proposed method achieved almost the best results in terms of PSNR, SSIM and MAE compared to other methods.

Conclusions: The proposed method can serve as an effective tool for restoring corrupted S-µCT images, and it has the potential to promote the application of S-µCT.

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.cmpb.2022.107181DOI Listing

Publication Analysis

Top Keywords

proposed method
16
ring artifacts
12
mixed artifacts
12
artifacts noise
12
image restoration
8
deep cnn
8
artifacts
8
noise
8
noise s-µct
8
s-µct images
8

Similar Publications

Background: Kidney tumors, common in the urinary system, have widely varying survival rates post-surgery. Current prognostic methods rely on invasive biopsies, highlighting the need for non-invasive, accurate prediction models to assist in clinical decision-making.

Purpose: This study aimed to construct a K-means clustering algorithm enhanced by Transformer-based feature transformation to predict the overall survival rate of patients after kidney tumor resection and provide an interpretability analysis of the model to assist in clinical decision-making.

View Article and Find Full Text PDF

Background: X-ray grating-based dark-field imaging can sense the small angle scattering caused by object's micro-structures. This technique is sensitive to the porous microstructure of lung alveoli and has the potential to detect lung diseases at an early stage. Up to now, a human-scale dark-field CT (DF-CT) prototype has been built for lung imaging.

View Article and Find Full Text PDF

Background: Online adaptive radiotherapy (OART) and rapid quality assurance (QA) are essential for effective heavy ion therapy (HIT). However, there is a shortage of deep learning (DL) models and workflows for predicting Monte Carlo (MC) doses in such treatments.

Purpose: This study seeks to address this gap by developing a DL model for independent MC dose (MCDose) prediction, aiming to facilitate OART and rapid QA implementation for HIT.

View Article and Find Full Text PDF

Purpose: Aromatase inhibitor-associated musculoskeletal symptoms (AIMSS) are the most common adverse effects experienced by breast cancer patients. This scoping review aimed to systematically synthesize the predictors/risk factors and outcomes of AIMSS in patients with early-stage breast cancer.

Methods: A systematic search was conducted in PubMed, Web of Science, EMBASE, CINAHL, and the China National Knowledge Internet (CNKI) from inception to December 2024 following the scoping review framework proposed by Arksey and O'Malley (2005).

View Article and Find Full Text PDF

Predictive model performance may deteriorate when applied to data sources that were not used for training, thus, external validation is a key step in successful model deployment. As access to patient-level external data sources is typically limited, we recently proposed a method that estimates external model performance using only external summary statistics. Here, we benchmark the proposed method on multiple tasks using five large heterogeneous US data sources, where each, in turn, plays the role of an internal source and the remaining-external.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!