Oxidation of the nucleobases is of great concern for the stability of DNA strands and is considered as a source of mutagenesis and cancer. However, precise spectroscopy data, in particular in their electronic excited states are scarce if not missing. We here report an original way to produce isomer-selected radical cations of DNA bases, exemplified in the case of cytosine, through the photodissociation of cold cytosine-silver (C-Ag) complex. IR-UV dip spectroscopy of C-Ag features fingerprint bands for the two keto-amino cytosine tautomers. UV photodissociation (UVPD) of the isomer-selected C-Ag complexes produces the cytosine radical cation (C˙) without isomerization. IR-UV cryogenic ion spectroscopy of C˙ allows for the unambiguous structural assignment of the two keto-amino isomers of C˙. UVPD spectroscopy of the isomer-selected C˙ species is recorded at a unique spectral resolution. These benchmark spectroscopic data of the electronic excited states of C˙ are used to assess the quantum chemistry calculations performed at the TD-DFT, CASSCF/CASPT2 and CASSCF/MRCI-F12 levels.
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http://dx.doi.org/10.1039/d2cp03953b | DOI Listing |
J Phys Chem A
May 2024
Centro Láser de Ciencias Moleculares, Universidad Nacional de Córdoba. Haya de la Torre y Medina Allende. Pabellón Argentina, Ciudad Universitaria, Córdoba X5000HUA, Argentina.
The vibrational and electronic spectroscopy of the radical cations of two nucleobases (NB) (uracil and thymine) was studied by cryogenic ion photodissociation spectroscopy. The radical cations have been generated from the photodissociation of NB-Ag complexes. A charge transfer process from the NB to Ag governs the deactivation mechanism, leading to the formation of the radical cation without further tautomerization.
View Article and Find Full Text PDFJ Phys Chem A
February 2023
School of Chemistry, The University of Melbourne, Victoria, Australia3010.
Carbon aggregates containing between 10 and 30 atoms preferentially arrange themselves as planar rings. To learn more about this exotic allotrope of carbon, electronic spectra are measured for even cyclo[]carbon radical cations (-) using two-color photodissociation action spectroscopy. To eliminate spectral contributions from other isomers, the target cyclo[]carbon radical cations are isomer-selected using a drift tube ion mobility spectrometer prior to spectroscopic interrogation.
View Article and Find Full Text PDFPhys Chem Chem Phys
October 2022
Université Paris-Saclay, CNRS, Institut des Sciences Moléculaires d'Orsay, F-91405 Orsay, France.
Oxidation of the nucleobases is of great concern for the stability of DNA strands and is considered as a source of mutagenesis and cancer. However, precise spectroscopy data, in particular in their electronic excited states are scarce if not missing. We here report an original way to produce isomer-selected radical cations of DNA bases, exemplified in the case of cytosine, through the photodissociation of cold cytosine-silver (C-Ag) complex.
View Article and Find Full Text PDFChemphyschem
April 2020
Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku, Yokohama, 226-8503, Japan.
The infrared (IR) spectra of alkali and alkaline earth metal ion complexes with the Ac-Tyr-NHMe (GYG) peptide have been measured by laser photodissociation in a cold ion trap coupled with an electrospray mass spectrometer. The GYG peptide corresponds to a portion of the ion selectivity filter in the KcsA K channel that allows K to pass, but blocks Na even though it has a smaller ionic radius than K . This current study extends a previous investigation on Na and K to the entire set of alkali metaI ions and alkaline earth dications.
View Article and Find Full Text PDFJ Phys Chem Lett
May 2019
Laboratory for Chemistry and Life Science, Institute of Innovative Research , Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku , Yokohama , 226-8503 , Japan.
Chirality plays an essential role in biological molecular recognition, such as neurotransmission. Here, we applied electrospray-cold ion trap spectroscopy to complexes of a partial binding motif SIVSF of a β-adrenergic receptor pocket with L- and D-epinephrine AdH. The ultraviolet spectrum of the SIVSF-AdH complex changed drastically when L-AdH was replaced by its enantiomer.
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