Background And Objective: Accurate lung tumor segmentation from computed tomography (CT) is complex due to variations in tumor sizes, shapes, patterns and growing locations. Learning semantic and spatial relations between different feature channels, image regions and positions is critical yet challenging.
Methods: We propose a new segmentation method, PRCS, by learning and integrating multi-channel contextual relations, and spatial and position dependencies across image regions. Firstly, to extract contextual relationships between different deep image feature tensor channels, we propose a new convolutional bi-directional gated recurrent unit based module for forward and backward learning. Secondly, a novel cross-channel region-level attention mechanism is proposed to discriminate the contributions of different local regions and associated features in the global learning process. Finally, spatial and position dependencies are formulated by a new position-enhanced self-attention mechanism. The new attention can measure the diverse contributions of other positions to a target position and obtain an enhanced adaptive feature vector for the target position.
Results: Our model outperformed seven state-of-the-art segmentation methods on both public and in-house lung tumor datasets in terms of spatial overlapping and shape similarity. Ablation study results proved the effectiveness of three technical innovations and generalization ability on different 3D CNN segmentation backbones.
Conclusion: The proposed model enhanced the learning and propagation of contextual, spatial and position relations in 3D volumes, improving lung tumours' segmentation performance with large variations and indistinct boundaries. PRCS provides an effective automated approach to support precision diagnosis and treatment planning of lung cancer.
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http://dx.doi.org/10.1016/j.cmpb.2022.107147 | DOI Listing |
Front Biosci (Landmark Ed)
December 2024
Department of Critical Care Medicine, The First Affiliated Hospital of Chongqing Medical University, 400016 Chongqing, China.
Background: Acute lung injury (ALI) significantly impacts the survival rates in intensive care units (ICU). Releasing a lot of pro-inflammatory mediators during the progression of the disease is a core feature of ALI, which may lead to uncontrolled inflammation and further damages the tissues and organs of patients. This study explores the potential therapeutic mechanisms of Dexmedetomidine (Dex) in ALI.
View Article and Find Full Text PDFJACS Au
December 2024
Natural Products Research Institute, College of Pharmacy, Seoul National University, Seoul 08826, Republic of Korea.
Four new macrolides, spirosnuolides A-D (-, respectively), were discovered from the termite nest-derived sp. INHA29. Spirosnuolides A-D are 18-membered macrolides sharing an embedded [6,6]-spiroketal functionality inside the macrocycle and are conjugated with structurally uncommon side chains featuring cyclopentenone, 1,4-benzoquinone, hydroxyfuroic acid, or butenolide moieties.
View Article and Find Full Text PDFIndian J Orthop
January 2025
Department of Orthopedics and Traumatology, Abdurrahman Yurtaslan Training and Research Hospital, Ankara, Turkey.
Background: Soft-tissue sarcoma involving the popliteal fossa remains challenging because it is difficult to achieve wide margins with limb salvage in this location. Adjuvant therapy is frequently necessary, and limb function can be adversely affected. We reviewed our experience with these tumors.
View Article and Find Full Text PDFOncol Res
December 2024
Department of Hepatobiliary Surgery, The Second Affiliated Hospital of Chongqing Medical University, Chongqing, 400016, China.
Background: Aberrant expression of RNA-binding proteins (RBPs) has been linked to a variety of diseases, including hematological disorders, cardiovascular diseases, and multiple types of cancer. Heterogeneous nuclear ribonucleoprotein C (HNRNPC), a member belonging to the heterogeneous nuclear ribonucleoprotein (hnRNP) family, plays a pivotal role in nucleic acid metabolism. Previous studies have underscored the significance of HNRNPC in tumorigenesis; however, its specific role in malignant tumor progression remains inadequately characterized.
View Article and Find Full Text PDFOncol Res
December 2024
Department of Respiratory and Critical Care Medicine, Affiliated Hospital of Nantong University, Medical School of Nantong University, Nantong, 226001, China.
Background: Lung cancer is a life-threatening disease that occurs worldwide, but is especially common in China. The crucial role of the tumour microenvironment (TME) in non-small cell lung cancer (NSCLC) has attracted recent attention. Cancer-associated fibroblasts (CAFs) are the main factors that contribute to the TME function, and CAF exosomes are closely linked to NSCLC.
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