In live cells, phase separation is thought to organize macromolecules into membraneless structures known as biomolecular condensates. Here, we reconstituted transcription in condensates from purified mitochondrial components using optimized in vitro reaction conditions to probe the structure-function relationships of biomolecular condensates. We find that the core components of the mt-transcription machinery form multiphasic, viscoelastic condensates in vitro. Strikingly, the rates of condensate-mediated transcription are substantially lower than in solution. The condensate-mediated decrease in transcriptional rates is associated with the formation of vesicle-like structures that are driven by the production and accumulation of RNA during transcription. The generation of RNA alters the global phase behavior and organization of transcription components within condensates. Coarse-grained simulations of mesoscale structures at equilibrium show that the components stably assemble into multiphasic condensates and that the vesicles formed in vitro are the result of dynamical arrest. Overall, our findings illustrate the complex phase behavior of transcribing, multicomponent condensates, and they highlight the intimate, bidirectional interplay of structure and function in transcriptional condensates.
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http://dx.doi.org/10.1073/pnas.2207303119 | DOI Listing |
J Fluoresc
January 2025
Department of Chemistry, Sardar Vallabhbhai National Institute Technology, Surat, Gujarat, 395007, India.
An easy-to-synthesize aggregation-induced emission (AIE) active Schiff base HNSA was obtained by condensing equimolar amount of 3-hydroxy-2-naphthohydrazide and salicylaldehyde. In pure DMSO, HNSA is non-fluorescent, but increasing the HEPES (HO, 10 mM, pH 7.4) fraction (f) ≥ 90% showed an intense green fluorescence with maximum fluorescence intensity at 515 nm.
View Article and Find Full Text PDFEur Radiol Exp
January 2025
Division of Cardiothoracic Imaging, Department of Radiology and Imaging Sciences, Emory University Hospital, Atlanta, GA, USA.
Background: This retrospective study aims to evaluate the impact of a content-based image retrieval (CBIR) application on diagnostic accuracy and confidence in interstitial lung disease (ILD) assessment using high-resolution computed tomography CT (HRCT).
Methods: Twenty-eight patients with verified pattern-based ILD diagnoses were split into two equal datasets (1 and 2). The images were assessed by two radiology residents (3rd and 5th year) and one expert radiologist in four sessions.
Chaos
January 2025
KLMM, Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing 100190, China.
In this paper, we undertake a systematic exploration of soliton turbulent phenomena and the emergence of extreme rogue waves within the framework of the one-dimensional fractional nonlinear Schrödinger (FNLS) equation, which appears in many fields, such as nonlinear optics, Bose-Einstein condensates, plasma physics, etc. By initiating simulations with a plane wave modulated by small noise, we scrutinized the universal regimes of non-stationary turbulence through various statistical indices. Our analysis elucidates a marked increase in the probability of rogue wave occurrences as the system evolves within a certain range of Lévy index α, which can be ascribed to the broadened modulation instability bandwidth.
View Article and Find Full Text PDFChemSusChem
January 2025
Polish Academy of Sciences, Institute of Organic Chemistry, Kasprzaka 44/52, 01-224, Warsaw, POLAND.
We demonstrate the application of mechanochemistry in the synthesis of indolone-based photoswitches (hemiindigos, hemithioindigos, and oxindoles) via Knoevenagel condensation reactions. Utilizing ball-milling and an organic base (piperidine) acting as catalyst and solvent for liquid assisted grinding (LAG) conditions, we achieve rapid, solvent-free transformations, obtaining a set of known and previously unreported photoswitches, including highly functional amino acid-based photoswitches, multichromophoric derivatives and photoswitchable cavitands based on resorcin[4]arenes. The reaction under mechanochemical conditions gives moderate-to-high yields and is highly stereoselective leading to Z-isomers of hemiindigos and hemithioindigos and E-isomers of oxindoles.
View Article and Find Full Text PDFDalton Trans
January 2025
State Key Laboratory of New Textile Materials and Advanced Processing Technologies, Wuhan Textile University, Wuhan 430200, China.
The quest for novel nonlinear optical (NLO) polymorphs is pivotal for advancing laser technology and frequency conversion applications. We present a detailed study on the synthesis and properties of the 2 polymorph of CHNOZn, which exhibits an enhanced second harmonic generation (SHG) effect, 0.3 times that of KDP, nearly 8-fold higher than the 422 phase.
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