AI Article Synopsis
- Lung cancer is a leading cause of cancer deaths globally, with non-small cell lung carcinoma (NSCLC) treatment advancements highlighting a need to further understand its molecular mechanisms.
- A comprehensive analysis identified 426 differentially expressed genes (DEGs) linked to NSCLC, resulting in the discovery of 9 key hub genes that correlate with tumor growth, progression, and resistance to treatment, particularly in cases driven by EGFR or KRAS mutations.
- These hub genes, which impact cell cycle and proliferation, can serve as valuable biomarkers for NSCLC prognosis, revealing essential insights into the cancer's underlying processes and potential therapeutic targets.
Article Abstract
Lung cancer is one of the most common cancers worldwide and it is the leading cause of cancer-related mortality. Despite the treatment of patients with non-small cell lung carcinoma (NSCLC) have improved, the molecular mechanisms of NSCLC are still to be further explored. Microarray datasets from the Gene Expression Omnibus (GEO) database were selected to identify the candidate genes associated with tumorigenesis and progression of non-small cell lung carcinoma. The differentially expressed genes (DEGs) were identified by GEO2R. Protein-protein interaction network (PPI) were used to screen out hub genes. The expression levels of hub genes were verified by GEPIA, Oncomine and The Human Protein Atlas (HPA) databases. Survival analysis and receiver operating characteristic (ROC) curve analysis were performed to value the importance of hub genes in NSCLC diagnosis and prognosis. ENCODE and cBioPortal were used to explore the upstream regulatory mechanisms of hub genes. Analysis on CancerSEA Tool, CCK8 assay and colony formation assay revealed the functions of hub genes in NSCLC. A total of 426 DEGs were identified, including 93 up-regulated genes and 333 down-regulated genes. And nine hub genes (CDC6, KIAA0101, CDC20, BUB1B, CCNA2, NCAPG, KIF11, BUB1 and CDK1) were found to increase with the tumorigenesis, progression and cisplatin resistance of NSCLC, especially EGFR- or KRAS-mutation driven NSCLC. Hub genes were valuable biomarkers for NSCLC, and the overexpression of hub genes led to poor survival of NSCLC patients. Function analysis showed that hub genes played roles in cell cycle and proliferation, and knockdown of hub genes significantly inhibited A549 and SPCA1 cell growth. Further exploration demonstrated that copy number alterations (CNAs) and transcription activation may account for the up-regulation of hub genes. Hub genes identified in this study provided better understanding of molecular mechanisms within tumorigenesis and progression of NSCLC, and provided potential targets for NSCLC treatment as well.
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| http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9513139 | PMC |
| http://dx.doi.org/10.3389/fphar.2022.997842 | DOI Listing |
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