Risk-aware temporal cascade reconstruction to detect asymptomatic cases.

Knowl Inf Syst

Department of Computer Science, University of Iowa, Iowa City, 52242 IA USA.

Published: September 2022

This paper studies the problem of detecting in a temporal contact network in which multiple outbreaks have occurred. We show that the key to detecting asymptomatic cases well is taking into account both individual risk and the likelihood of disease-flow along edges. We consider both aspects by formulating the asymptomatic case detection problem as a (Directed PCST) problem. We present an approximation-preserving reduction from this problem to the problem and obtain scalable algorithms for the Directed PCST problem on instances with more than 1.5M edges obtained from both synthetic and fine-grained hospital data. On synthetic data, we demonstrate that our detection methods significantly outperform various baselines (with a gain of ). We apply our method to the infectious disease prediction task by using an additional feature set that captures exposure to detected asymptomatic cases and show that our method outperforms all baselines. We further use our method to detect infection sources ("patient zero") of outbreaks that outperform baselines. We also demonstrate that the solutions returned by our approach are clinically meaningful by presenting case studies.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9476452PMC
http://dx.doi.org/10.1007/s10115-022-01748-8DOI Listing

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