Darwin Core, the data standard used for sharing modern biodiversity and paleodiversity occurrence records, has previously lacked proper mechanisms for reporting what is known about the estimated age range of specimens from deep time. This has led to data providers putting these data in fields where they cannot easily be found by users, which impedes the reuse and improvement of these data by other researchers. Here we describe the development of the Chronometric Age Extension to Darwin Core, a ratified, community-developed extension that enables the reporting of ages of specimens from deeper time and the evidence supporting these estimates. The extension standardizes reporting about the methods or assays used to determine an age and other critical information like uncertainty. It gives data providers flexibility about the level of detail reported, focusing on the minimum information needed for reuse while still allowing for significant detail if providers have it. Providing a standardized format for reporting these data will make them easier to find and search and enable researchers to pinpoint specimens of interest for data improvement or accumulate more data for broad temporal studies. The Chronometric Age Extension was also the first community-managed vocabulary to undergo the new Biodiversity Informatics Standards (TDWG) review and ratification process, thus providing a blueprint for future Darwin Core extension development.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9477364PMC
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0261044PLOS

Publication Analysis

Top Keywords

darwin core
16
chronometric age
12
community-developed extension
8
extension darwin
8
data
8
data providers
8
age extension
8
reporting
5
age
5
extension
5

Similar Publications

Provision of continuous renal replacement therapy in children in intensive care in Australia and New Zealand.

Crit Care Resusc

December 2024

Paediatric Critical Care Research Group, Child Health Research Centre, The University of Queensland, South Brisbane, QLD, Australia.

Objectives: The objective of this study was to describe current use, clinical practice, and outcomes of continuous renal replacement therapy (CRRT) in children in the intensive care unit (ICU) in Australia and New Zealand.

Design: retrospective, binational registry-based cohort study and electronic survey of clinical practice.

Setting: ICUs that contribute to the Australian and New Zealand Paediatric Intensive Care Registry and a survey conducted in November 2021 including ICUs accredited for paediatric intensive care training that provide CRRT for children were part of this study.

View Article and Find Full Text PDF

Natural hybridisation among rare or endangered species and stable congenerics is increasingly topical for the conservation of species-level diversity under anthropogenic impacts. Evidence for beneficial genes being introgressed into or selected for in hybrids raises concurrent questions about its evolutionary significance. In Darwin's tree finches on the island of Floreana (Galapagos Islands, Ecuador), the Critically Endangered medium tree finch () undergoes introgression with the stable small tree finch (), and hybrids regularly backcross with Earlier studies in 2005-2013 documented an increase in the frequency of hybridisation on Floreana using field-based and microsatellite data.

View Article and Find Full Text PDF

The genome sequence of a leaf beetle, (Linnaeus, 1758).

Wellcome Open Res

August 2024

Amgueddfa Cymru, Cardiff, Wales, UK.

We present a genome assembly from a female leaf beetle, (Arthropoda; Insecta; Coleoptera; Chrysomelidae). The total length of the genome sequence is 718.30 megabases.

View Article and Find Full Text PDF

The genome sequence of Gravenhorst, 1807.

Wellcome Open Res

November 2024

Sawfly Recording Scheme, Bedford, England, UK.

Article Synopsis
  • The study reports a complete genome assembly of a female shiny-headed wasp-sawfly, detailing its genetic structure and information.
  • The entire genome spans 199.80 megabases, with an impressive 99.95% organized into 18 chromosomal pseudomolecules.
  • Additionally, the mitochondrial genome was assembled, measuring 33.96 kilobases in length.
View Article and Find Full Text PDF

The genome sequence of the Grey Shoulder-knot, (Hufnagel, 1766).

Wellcome Open Res

April 2024

Natural History Museum, London, England, UK.

Article Synopsis
  • - This study presents a genome assembly for the Grey Shoulder-knot moth, detailing a genome size of 508.6 megabases and organizing it into 31 chromosomal pseudomolecules, including the Z sex chromosome.
  • - The mitochondrial genome was also assembled, measuring 15.33 kilobases.
  • - Gene annotation revealed a total of 18,397 protein-coding genes within this genome assembly, identified using Ensembl.
View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!