Whole-genome sequence of a high-temperature edible mushroom (zhudugu).

Front Microbiol

Shandong Provincial Key Laboratory of Applied Mycology, School of Life Sciences, Qingdao Agricultural University, Qingdao, China.

Published: August 2022

AI Article Synopsis

  • This study sequenced and assembled the genome of a high-temperature edible mushroom called Zhudugu, which is popular in Asia, revealing its unique genetic traits compared to low-temperature wood-rotting mushrooms.
  • The genome, consisting of 40.00 Mb with 12,628 protein-coding genes, showcases significant enzymatic potential for breaking down lignocellulose, highlighting its robust degradation capacity.
  • The findings also offer insights into the mushroom's mating-type genes and may aid in genome-assisted breeding and understanding its tolerance to high temperatures.

Article Abstract

Most of the sequenced wood-rotting edible mushroom produce fruiting body at relatively low temperatures. Little information has been known about the high-temperature wood-rotting mushroom. Here, we performed sequencing and assembly of the genome of a high-temperature edible mushroom from a monokaryotic strain zhudugu2 using the Illumina and Pac-Bio CLR sequencing technologies. , also known as Zhudugu in China, is a well-known culinary edible mushroom that has been widely distributed and cultivated in China, Southeast Asia, and South Asia. The genome consists of 40.00 Mb in 27 contigs with a contig N50 of 4.384 Mb. Phylogenetic analysis reveals that and other strains in clustered in one clade. Phylogenetic analysis and average nucleotide identity analysis indicated that the genome showed a closer relationship with other species. Chromosome collinearity analysis revealed a high level of collinearity between and . There are 12,628 protein-coding genes annotated in this monoploid genome. A total of 481 enzymes accounting for 514 carbohydrate-active enzymes (CAZymes) terms were identified in the genome, including 15 laccases and 10 class II peroxidases predicted in the genome, which revealed the robustness of lignocellulose degradation capacity of . The mating- type locus of consisted of a pair of homeodomain mating-type genes and . The mating- type locus of consisted of at least four pheromone receptor genes and three pheromone genes. The genome is not only beneficial for the genome-assisted breeding of this mushroom but also helps us to understand the high-temperature tolerance of the edible mushroom.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9424821PMC
http://dx.doi.org/10.3389/fmicb.2022.941889DOI Listing

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