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Nanopore sequencing of chloroplast genome of (L.) Dumort., 1835 (Scapaniaceae, Jungermanniales). | LitMetric

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Article Abstract

We performed long-read sequencing of the (L.) Dumort. chloroplast genome with Oxford Nanopore Technology using improved flow cells (10.3). is a leafy liverwort living on rocks in or near water in mountains. The size of the complete plastome sequence is 117,651 bp long, the large single copy (LSC) region is 80,606 bp long, the small single copy (SSC) region is 19,401 bp long. The nanopore sequencing allowed for the distinction of inverted repeats A and B (IRA, IRB) which were not identical. Guanine cytosine (GC) ratio is 33.7% for the complete chloroplast genome, for LSC and SSC are 31.7% and 30.6%. The phylogeny reconstruction shows that is the sister to and .

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9347474PMC
http://dx.doi.org/10.1080/23802359.2022.2107458DOI Listing

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