How Reproducibility Will Accelerate Discovery Through Collaboration in Physio-Logging.

Front Physiol

Department of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, CA, United States.

Published: July 2022

AI Article Synopsis

  • The lack of reproducibility in physio-logging research limits the ability to ask new ecophysiological questions by trapping data analysis in a scientific silo.
  • The explosion of complex datasets from physio-loggers exceeds the current informatics capacity, making it difficult for ecophysiologists to share their data and collaborate effectively.
  • Emphasizing computational reproducibility can improve scientific integrity and accelerate discoveries by fostering collaboration across disciplines, while providing a framework to enhance data analysis and sharing in the field.

Article Abstract

What new questions could ecophysiologists answer if physio-logging research was fully reproducible? We argue that (computational hurdles resulting from prioritizing short-term goals over long-term sustainability) stemming from insufficient (field-wide tools, standards, and norms for analyzing and sharing data) trapped physio-logging in a scientific silo. This debt stifles comparative biological analyses and impedes interdisciplinary research. Although physio-loggers (e.g., heart rate monitors and accelerometers) opened new avenues of research, the explosion of complex datasets exceeded ecophysiology's informatics capacity. Like many other scientific fields facing a deluge of complex data, ecophysiologists now struggle to share their data and tools. Adapting to this new era requires a change in mindset, from "data as a noun" (e.g., traits, counts) to "data as a sentence", where measurements (nouns) are associate with transformations (verbs), parameters (adverbs), and metadata (adjectives). Computational reproducibility provides a framework for capturing the entire sentence. Though usually framed in terms of scientific integrity, reproducibility offers immediate benefits by promoting collaboration between individuals, groups, and entire fields. Rather than a tax on our productivity that benefits some nebulous greater good, reproducibility can accelerate the pace of discovery by removing obstacles and inviting a greater diversity of perspectives to advance science and society. In this article, we 1) describe the computational challenges facing physio-logging scientists and connect them to the concepts of and , 2) demonstrate how other scientific fields overcame similar challenges by embracing computational reproducibility, and 3) present a framework to promote computational reproducibility in physio-logging, and bio-logging more generally.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9304648PMC
http://dx.doi.org/10.3389/fphys.2022.917976DOI Listing

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