Universal catastrophe time distributions of dynamically unstable polymers.

Phys Rev E

John A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts 02138, USA.

Published: June 2022

AI Article Synopsis

  • Dynamic instability in biopolymers involves the phases of growth, catastrophe, and shrinkage in quasi-one-dimensional filaments.
  • Catastrophic events are primarily influenced by the balance of hydrolysis and polymerization at the polymer's tip, leading to predictable exponential catastrophe time distributions.
  • Depletion of monomers from a limited pool significantly alters the shape of this distribution, even if the overall polymerization rate remains relatively unchanged.

Article Abstract

Dynamic instability-the growth, catastrophe, and shrinkage of quasi-one-dimensional filaments-has been observed in multiple biopolymers. Scientists have long understood the catastrophic cessation of growth and subsequent depolymerization as arising from the interplay of hydrolysis and polymerization at the tip of the polymer. Here we show that for a broad class of catastrophe models, the expected catastrophe time distribution is exponential. We show that the distribution shape is insensitive to noise, but that depletion of monomers from a finite pool can dramatically change the distribution shape by reducing the polymerization rate. We derive a form for this finite-pool catastrophe time distribution and show that finite-pool effects can be important even when the depletion of monomers does not greatly alter the polymerization rate.

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Source
http://dx.doi.org/10.1103/PhysRevE.105.064503DOI Listing

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